Evidence map›Paper›PMID 40115769›Full record

ArticlePlant biotechnology (Tokyo, Japan)2024

Multi-omics signatures of diverse plant callus cultures.

June-Sik Kim, Muneo Sato, Mikiko Kojima, Muchamad Imam Asrori, Yukiko Uehara-Yamaguchi, Yumiko Takebayashi, Thi Nhung Do, Thi Yen Do, Kieu Oanh Nguyen Thi, Hitoshi Sakakibara and 3 more

Abstract read
In one paragraph

Article in Plant biotechnology (Tokyo, Japan), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

June-Sik KimRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Muneo SatoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Mikiko KojimaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Muchamad Imam AsroriProgram in Biological System Science, Graduate School of Comprehensive Scientific Research, Hiroshima Prefectural University, Shobara, Hiroshima 727-0023, Japan.
Yukiko Uehara-YamaguchiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Yumiko TakebayashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Thi Nhung DoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Thi Yen DoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Kieu Oanh Nguyen ThiDepartment of Life Sciences, University of Science and Technology of Hanoi, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet, Cau Giay, Hanoi, Vietnam.
Hitoshi SakakibaraRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Keiichi MochidaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Shijiro OgitaProgram in Biological System Science, Graduate School of Comprehensive Scientific Research, Hiroshima Prefectural University, Shobara, Hiroshima 727-0023, Japan.
Masami Yokota HiraiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Callus cultures are fundamental for plant propagation, genetic transformation, and emerging biotechnological applications that use cellular factories to produce high-value metabolites like plant-based drugs. These applications exploit the diverse metabolic capabilities of various plant species. However, optimizing culture conditions for specific applications necessitates a deep understanding of the transcriptome, metabolome, and phytohormone profiles of different species. Comprehensive comparative studies of callus characteristics across species are limited. Here, we analyzed the transcriptome, metabolome, and phytohormone profiles of callus cultures from tobacco (

Indexed as

callus culturehormonometranscriptomewidely targeted metabolome

Identifiers

PMID40115769
PMCPMC11921129

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.