ReviewComputational and structural biotechnology journal2025
Fast detection of unique genomic regions.
Review in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
1 citing paper in PubMed.
- SURE-Pipe: a pipeline to compare genomes and extract shared and unique regions.NAR genomics and bioinformatics · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Unique genomic regions are of particular interest in two scenarios: When extracted from a single mammalian target genome, they are highly enriched for developmental genes. When extracted from target genomes compared to closely related neighbor genomes, they are highly enriched for diagnostic markers. Despite their biological importance and potential economic value, unique regions remain difficult to detect from whole genome sequences. In this review we survey three efficient programs for the detection of unique regions at scale, genmap, macle, and fur. We explain these programs and demonstrate their application by analyzing simulated and real data. Example scripts for searching for unique regions are available from the Github repository evolbioinf/sure as part of a detailed tutorial.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.