ArticleBiodiversity data journal2025
First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples.
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1 citing paper in PubMed.
- Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2).Biodiversity data journal · 2026Article
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Authors and funding
56 authors.
Christina PavloudiEuropean Marine Biological Resource Centre (EMBRC-ERIC), Paris, France European Marine Biological Resource Centre (EMBRC-ERIC) Paris France.ORCID https://orcid.org/0000-0001-5106-6067
Ioulia SantiEuropean Marine Biological Resource Centre (EMBRC-ERIC), Paris, France European Marine Biological Resource Centre (EMBRC-ERIC) Paris France.ORCID https://orcid.org/0000-0002-0202-8256
Iñigo AzuaDepartment of Immunology, Microbiology and Parasitology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Biscay, Spain Department of Immunology, Microbiology and Parasitology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU) Biscay Spain.ORCID https://orcid.org/0000-0002-0704-4060
Zuriñe BañaDepartment of Immunology, Microbiology and Parasitology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Biscay, Spain Department of Immunology, Microbiology and Parasitology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU) Biscay Spain.
Mauro BastianiniCNR-National Research Council, ISMAR - Institute of Marine Sciences, Venice, Italy CNR-National Research Council, ISMAR - Institute of Marine Sciences Venice Italy.
Caroline BelserGénomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057, Evry, France Génomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057 Evry France.
Jone BilbaoDepartment of Plant Biology and Ecology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Biscay, Spain Department of Plant Biology and Ecology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU) Biscay Spain.ORCID https://orcid.org/0000-0002-9278-1515
Julie Bitz-ThorsenNorwegian College of Fishery Science, UiT The Arctic University of Norway, Tromsø, Norway Norwegian College of Fishery Science, UiT The Arctic University of Norway Tromsø Norway.ORCID https://orcid.org/0000-0002-0815-5432
Caroline BroudinSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.
Mathieu CamusatSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.
Ibon CancioDepartment of Zoology and Animal Cell Biology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Biscay, Spain Department of Zoology and Animal Cell Biology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU) Biscay Spain.
Louis Caray-CounilSorbonne University, CNRS, Laboratoire d'Océanographie de Villefranche, Villefranche-sur-Mer, France Sorbonne University, CNRS, Laboratoire d'Océanographie de Villefranche Villefranche-sur-Mer France.
Raffaella CasottiIntegrative Marine Ecology Department, Stazione Zoologica Anton Dorn, Naples, Italy Integrative Marine Ecology Department, Stazione Zoologica Anton Dorn Naples Italy.
Jade CastelSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.
Thierry ComtetSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.ORCID https://orcid.org/0000-0002-0597-1768
Cymon J CoxCentro de Ciências do Mar, Universidade do Algarve, Faro, Portugal Centro de Ciências do Mar, Universidade do Algarve Faro Portugal.ORCID https://orcid.org/0000-0002-4927-979X
Claire DaguinSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.ORCID https://orcid.org/0000-0003-4665-6411
Oihane Díaz de CerioDepartment of Zoology and Animal Cell Biology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU), Biscay, Spain Department of Zoology and Animal Cell Biology, Faculty of Science and Technology and Research Centre for Experimental Marine Biology and Biotechnology, Plentziako itsas Estazioa (PiE-UPV/EHU), University of the Basque Country (UPV/EHU) Biscay Spain.ORCID https://orcid.org/0000-0002-5605-8434
Katrina ExterFlanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)], Ostend, Belgium Flanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)] Ostend Belgium.ORCID https://orcid.org/0000-0002-5911-1536
Cécile FauvelotUMR ENTROPIE (IRD, Université de La Réunion, CNRS, IFREMER, Université de la Nouvelle-Calédonie), Villefranche-sur-Mer, France and Sorbonne University, CNRS, Laboratoire d'Océanographie de Villefranche, Villefranche-sur-Mer, France UMR ENTROPIE (IRD, Université de La Réunion, CNRS, IFREMER, Université de la Nouvelle-Calédonie), Villefranche-sur-Mer, France and Sorbonne University, CNRS, Laboratoire d'Océanographie de Villefranche Villefranche-sur-Mer France.
Miguel J FradaDepartment of Ecology, Evolution and Behavior, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel and The Interuniversity Institute for Marine Sciences in Eilat, Eilat, Israel Department of Ecology, Evolution and Behavior, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel and The Interuniversity Institute for Marine Sciences in Eilat Eilat Israel.
Pierre E GalandSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, Banyuls sur Mer, France Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls Banyuls sur Mer France.
Laurence GarczarekSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.
Jose González FernándezCentro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla Vigo Spain.ORCID https://orcid.org/0000-0003-1576-9819
Laure GuillouSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.
Pascal I HablützelFlanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)], Ostend, Belgium Flanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)] Ostend Belgium.ORCID https://orcid.org/0000-0002-6739-4994
Hanneloor HeynderickxFlanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)], Ostend, Belgium Flanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)] Ostend Belgium.ORCID https://orcid.org/0000-0002-5611-837X
Céline HoubinSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.ORCID https://orcid.org/0000-0002-4572-3371
Anne Emmanuelle KervellaEuropean Marine Biological Resource Centre (EMBRC-ERIC), Paris, France European Marine Biological Resource Centre (EMBRC-ERIC) Paris France.
Apostolos KrystallasInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.
Rune LagaisseFlanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)], Ostend, Belgium Flanders Marine Institute [Vlaams Instituut voor de Zee (VLIZ)] Ostend Belgium.ORCID https://orcid.org/0000-0001-9191-9140
Arnaud LaroquetteEuropean Marine Biological Resource Centre (EMBRC-ERIC), Paris, France European Marine Biological Resource Centre (EMBRC-ERIC) Paris France.
Lyvia LescureSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, Banyuls sur Mer, France Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls Banyuls sur Mer France.
Eva LopesCIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal, Department of Biology, FCUP-Faculty of Sciences of the University of Porto, Porto, Portugal CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal, Department of Biology, FCUP-Faculty of Sciences of the University of Porto Porto Portugal.
Melina LoulakakiInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.
Bruno LouroCentro de Ciências do Mar, Universidade do Algarve, Faro, Portugal Centro de Ciências do Mar, Universidade do Algarve Faro Portugal.ORCID https://orcid.org/0000-0001-8164-581X
Catarina MagalhaesCIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal, Department of Biology, FCUP-Faculty of Sciences of the University of Porto, Porto, Portugal CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal, Department of Biology, FCUP-Faculty of Sciences of the University of Porto Porto Portugal.ORCID https://orcid.org/0000-0001-9576-2398
Maria MaidanouInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.
Francesca MargiottaStazione Zoologica Anton Dohrn, Naples, Italy Stazione Zoologica Anton Dohrn Naples Italy.
Marina MontresorIntegrative Marine Ecology Department, Stazione Zoologica Anton Dorn, Naples, Italy Integrative Marine Ecology Department, Stazione Zoologica Anton Dorn Naples Italy.
Fabrice NotSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.
Estefanía ParedesCentro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla Vigo Spain.ORCID https://orcid.org/0000-0001-8829-360X
Isabella PercopoStazione Zoologica Anton Dohrn, Naples, Italy Stazione Zoologica Anton Dohrn Naples Italy.
Erwan PéruSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, Banyuls sur Mer, France Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls Banyuls sur Mer France.
Julie PoulainGénomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057, Evry, France Génomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057 Evry France.ORCID https://orcid.org/0000-0002-8744-3116
Kim PræbelNorwegian College of Fishery Science, UiT The Arctic University of Norway, Tromsø, Norway Norwegian College of Fishery Science, UiT The Arctic University of Norway Tromsø Norway.
Fabienne Rigaut-JalabertSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.
Sarah RomacSorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680, Roscoff, France Sorbonne Université, CNRS, Adaptation et Diversité en Milieu Marin, AD2M, 29680 Roscoff France.
Melanthia StavroulakiInstitute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR) Heraklion Greece.ORCID https://orcid.org/0000-0003-4392-7159
Jesús Souza TroncosoCentro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla, Vigo, Spain Centro de Investigación Mariña, Universidade de Vigo, Estación de Ciencias Mariñas de Toralla Vigo Spain.
Eric ThiébautSorbonne Université, CNRS, OSU STAMAR, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, OSU STAMAR, Station Biologique de Roscoff, 29680 Roscoff France.
Wilfried ThomasSorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680, Roscoff, France Sorbonne Université, CNRS, FR2424, Station Biologique de Roscoff, 29680 Roscoff France.
Andrzej TkaczCentro de Ciências do Mar, Universidade do Algarve, Faro, Portugal Centro de Ciências do Mar, Universidade do Algarve Faro Portugal.
Anna Chiara TranoStazione Zoologica Anton Dohrn, Naples, Italy Stazione Zoologica Anton Dohrn Naples Italy.
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057, Evry, France Génomique Métabolique, Genoscope, Institut François Jacob, Commissariat à l'Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay, 2 Rue Gaston Crémieux, 91057 Evry France.
Nicolas PadeEuropean Marine Biological Resource Centre (EMBRC-ERIC), Paris, France European Marine Biological Resource Centre (EMBRC-ERIC) Paris France.ORCID https://orcid.org/0000-0003-2733-9752
Funding
No grant is acknowledged in the PubMed record.
Abstract
The European Marine Omics Biodiversity Observation Network (EMO BON) is an initiative of the European Marine Biological Resource Centre (EMBRC) to establish a persistent genomic observatory amongst designated European coastal marine sites, sharing the same protocols for sampling and data curation. Environmental samples are collected from the water column and, at some sites, soft sediments and hard substrates (Autonomous Reef Monitoring Structures - ARMS), together with a set of mandatory and discretionary metadata (including Essential Ocean Variables - EOVs). Samples are collected following standardised protocols at regular and specified intervals and sequenced in large six-monthly batches at a centralised sequencing facility. The use of standard operating procedures (SOPs) during data collection, library preparation and sequencing aims to provide uniformity amongst the data collected from the sites. Coupled with strict adherence to open and FAIR (Findable, Accessible, Interoperable, Reusable) data principles, this ensures maximum comparability amongst samples and enhances reusability and interoperability of the data with other data sources. The observatory network was launched in June 2021, when the first sampling campaign took place.
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