Evidence map›Paper›PMID 40114065›Full record

ArticleBMC microbiology2025

Profiling bacterial communities in feedlot cattle affected with bovine foot rot and bovine digital dermatitis lesions using 16S rRNA gene sequencing and quantitative real-time PCR.

Susan Pyakurel, Benjamin Jordan Caddey, Angelica Petersen Dias, Jeroen De Buck, Douglas Walter Morck, Karin Orsel

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Characterization of T cell responses againstFrontiers in immunology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Susan PyakurelFaculty of Veterinary Medicine, Health Sciences Center, University of Calgary, 3330 Hospital Drive, Calgary, NW, AB, T2N 4N1, Canada.
Benjamin Jordan CaddeyFaculty of Veterinary Medicine, Health Sciences Center, University of Calgary, 3330 Hospital Drive, Calgary, NW, AB, T2N 4N1, Canada.
Angelica Petersen DiasFaculty of Veterinary Medicine, Health Sciences Center, University of Calgary, 3330 Hospital Drive, Calgary, NW, AB, T2N 4N1, Canada.
Jeroen De BuckFaculty of Veterinary Medicine, Health Sciences Center, University of Calgary, 3330 Hospital Drive, Calgary, NW, AB, T2N 4N1, Canada.
Douglas Walter MorckDepartment of Biological Sciences, Faculty of Science, University of Calgary, Calgary, Canada.
Karin OrselFaculty of Veterinary Medicine, Health Sciences Center, University of Calgary, 3330 Hospital Drive, Calgary, NW, AB, T2N 4N1, Canada. karin.orsel@ucalgary.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe primary infectious foot diseases in cattle, bovine foot rot (BFR) and bovine digital dermatitis (BDD), commonly associated with Fusobacterium necrophorum and Treponema spp., respectively, are considered polybacterial in etiology with several additional bacteria involved such as Porphyromonas levii, Bacteroides pyogenes, and Fusobacterium mortiferum. BDD is further classified into several M-stages (M2: active and ulcerative; M4: chronic proliferative). Using quantitative real-time PCR and 16S rRNA gene (V3-V4 region) sequencing, we quantified several specific bacteria and analyzed bacterial communities present in biopsies of visually diagnosed cases of BFR (n = 32), M2 (n = 17), and M4 (n = 12) stages of BDD in feedlot cattle in contrast to inconclusive (n = 14) clinical cases and healthy (n = 25) cattle.

resultsBacterial composition of healthy skin differed significantly from that of skin lesions, and between BFR and both lesion stages of BDD, which also differed from each other. All animal groups had generally the same bacterial species, albeit in distinct ratios. Differential abundance analysis relative to the healthy group identified a higher abundance of Fusobacterium spp. in BFR and Treponema spp. in both BDD-M2 and BDD-M4. P. levii had the highest absolute abundance in all animal groups. A significantly higher abundance of F. necrophorum was observed in BFR compared to BDD-M2, and F. mortiferum in both stages of BDD compared to the inconclusive group. Both BDD M-stages had a significantly higher abundance of Treponema phagedenis and Treponema pedis. Treponema medium was significantly more abundant in BDD-M4 compared to BDD-M2.

conclusionThese results further the evidence of the involvement of Treponema spp., in BDD in feedlot cattle. However, it suggests further exploration of the role of Fusobacterium spp. in BFR and BDD. Importantly, a discriminating polybacterial involvement in these infections was evident demonstrated by changes in the population of multiple bacteria when compared to healthy animals.

Indexed as

BacteriaCattle DiseasesDigital DermatitisFoot DiseasesMicrobiotaAnimalsCattleDNA, BacterialPhylogenyReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNASkinTreponemaDNA, BacterialRNA, Ribosomal, 16SAmpliconBacterial compositionBeefCanadaCowMicrobiomeMicrobiotaNGSqPCR

Identifiers

PMID40114065
PMCPMC11924851

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.