Evidence map›Paper›PMID 40113983›Full record

ArticleCommunications biology2025

Unusual traits shape the architecture of the Ig ancestor molecule.

Alejandro Urdiciain, Thomas Madej, Jiyao Wang, James Song, Elena Erausquin, Philippe Youkharibache, Jacinto López-Sagaseta

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alejandro Urdiciain *Unit of Protein Crystallography and Structural Immunology, Navarrabiomed, 31008, Navarra, Spain.
Thomas Madej *National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Jiyao WangNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
James SongNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Elena ErausquinUnit of Protein Crystallography and Structural Immunology, Navarrabiomed, 31008, Navarra, Spain.ORCID http://orcid.org/0000-0003-1560-9671
Philippe YoukharibacheCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA. philippe.youkharibache@nih.gov.ORCID http://orcid.org/0000-0002-2942-2712
Jacinto López-SagasetaUnit of Protein Crystallography and Structural Immunology, Navarrabiomed, 31008, Navarra, Spain. jacinto.lopez.sagaseta@navarra.es.ORCID http://orcid.org/0000-0002-7774-4361

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the ancestral Ig domain's molecular structure and tracing the evolution of Ig-like proteins are fundamental components missing from our comprehension of their evolutionary trajectory and function. We have determined high-resolution structures of two Ig-like proteins from the evolutionary most ancestral phylum, Porifera. The structures reveal N-terminal Ig-like domains with an unconventional configuration of features that set them apart from canonical Ig domains. These findings prompted us to call this novel domain as Ig "Early Variable" (EV)-set. Remarkably, the EV-sets are linked to C1-set domains. To the best of our knowledge, the C1-set has not been previously reported in non-vertebrates. The IgV and IgC1 tandems and their combination into functional Ig-like receptors are part of the adaptive immune system in higher vertebrates, which allows for highly specific immune responses. By unveiling important clues into the molecular configuration of ancestral Ig domains, these findings challenge and expand our understanding of how immunity has evolved within its current landscape.

Indexed as

Evolution, MolecularImmunoglobulin DomainsImmunoglobulinsAnimalsModels, MolecularPhylogenyImmunoglobulins

Identifiers

PMID40113983
PMCPMC11926128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.