Evidence map›Paper›PMID 40113929›Full record

ArticleScientific reports2025

Membrane tubulation induced by a bacterial glycolipid.

Kaoru Nomura, Akihiro Tsuji, Hayato Yamashita, Masayuki Abe, Kohki Fujikawa, Shoko Mori, Tsukiho Osawa, Hiromi Toyonaga, Tomohiro Osugi, Kazuma Yasuhara and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kaoru NomuraBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan. nomura@sunbor.or.jp.
Akihiro TsujiGraduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, 560-8531, Osaka, Japan.
Hayato YamashitaGraduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, 560-8531, Osaka, Japan.
Masayuki AbeGraduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, 560-8531, Osaka, Japan.
Kohki FujikawaBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan.
Shoko MoriBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan.
Tsukiho OsawaBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan.
Hiromi ToyonagaBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan.
Tomohiro OsugiBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan.
Kazuma YasuharaDivision of Materials Science, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama-cho, Ikoma, 630-0192, Japan.
Kenichi MorigakiBiosignal Research Center, Kobe University, 1-1 Rokkodaicho, Nada, Kobe, 657-8501, Japan.
Ken-Ichi NishiyamaDepartment of Biological Chemistry and Food Sciences, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, 020-8550, Iwate, Japan.
Keiko ShimamotoBioorganic Research Institute, Suntory Foundation for Life Sciences, 8-1-1 Seikadai, Seika- cho, Soraku-gun, Kyoto, 619-0284, Japan. shimamot@sunbor.or.jp.

Funding

Japan Society for the Promotion of Science JP18K06143Japan Society for the Promotion of Science JP19H02843Japan Society for the Promotion of Science JP20K05738Japan Society for the Promotion of Science JP22H02567Japan Society for the Promotion of Science JP23H03073Japan Society for the Promotion of Science JP24K17794Japan Society for the Promotion of Science JP24KJ1579
6 · The paper itself

Abstract

Membrane protein integrase (MPIase) is a glycolipid found in Escherichia coli cell membranes. It consists of diacylglycerol and a sugar chain comprising approximately 10 repeating trisaccharide units, made up of three types of N-acetylated amino sugars linked by pyrophosphate. In cooperation with proteinaceous translocons, MPIase regulates membrane protein integration. In this study, using various microscopic techniques, we demonstrated that externally added MPIase induces the formation of a single tubule protruding outward from giant unilamellar vesicles (GUVs). These tubules resembled those reported in studies involving membrane-perturbing proteins but differed in that MPIase formed aggregates at the base of the tubules. We also showed that hydrophobic interactions between longer sugar chains of MPIase play a key role in forming multiple aggregates on the membrane, which in turn induce membrane budding and triggers membrane protrusion. Once a single tubule begins to form from one of the aggregates, elongating a longer and narrower tubule can reduce line tension and elastic energy for a given area differences between the internal and external leaflets. These findings provide insights into the mechanism underlying glycolipid-induced membrane tubulation and suggest that the unique long sugar chain of MPIase can offer functions beyond its essential role in membrane protein integration.

Indexed as

Cell MembraneEscherichia coliEscherichia coli ProteinsGlycolipidsHydrophobic and Hydrophilic InteractionsUnilamellar LiposomesEscherichia coli ProteinsGlycolipidsUnilamellar Liposomes

Identifiers

PMID40113929
PMCPMC11926092

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.