Evidence map›Paper›PMID 40113807›Full record

ArticleNPJ vaccines2025

Endogenous viral elements constitute a complementary source of antigens for personalized cancer vaccines.

Christian Garde, Michail A Pavlidis, Pablo Garces, Emma J Lange, Sri H Ramarathinam, Mateo Sokač, Kirti Pandey, Pouya Faridi, Johanne Ahrenfeldt, Shanzou Chung and 7 more

Abstract read
In one paragraph

Article in NPJ vaccines, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Cancer Vaccines: Recent Insights and Future Directions.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Christian GardeEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark. cg@evaxion.ai.
Michail A PavlidisEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.ORCID http://orcid.org/0000-0002-8942-8921
Pablo GarcesEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.
Emma J LangeEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.
Sri H RamarathinamDepartment of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
Mateo SokačDepartment of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark.
Kirti PandeyDepartment of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
Pouya FaridiDepartment of Medicine, School of Clinical Sciences, Monash University, Clayton, VIC, Australia.
Johanne AhrenfeldtDepartment of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark.
Shanzou ChungDepartment of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
Stine FriisEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.
Daniela Kleine-KohlbrecherEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.
Nicolai J BirkbakDepartment of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark.
Jens V KringelumEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.
Birgitte RønøEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.ORCID http://orcid.org/0009-0007-6197-2646
Anthony W PurcellDepartment of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia.
Thomas TrolleEvaxion Biotech A/S, Dr Neergaards Vej 5F, Hørsholm, Denmark.ORCID http://orcid.org/0000-0003-0762-2198

Funding

Aarhus Universitets Forskningsfond (Aarhus University Research Foundation) AUFF-E-2018-7-14IngaBritt och Arne Lundbergs Forskningsstiftelse (Ingabritt and Arne Lundberg Research Foundation) R272-2017-4040
6 · The paper itself

Abstract

Personalized cancer vaccines (PCVs) largely leverage neoantigens arising from somatic mutations, limiting their application to patients with relatively high tumor mutational burden (TMB). This underscores the need for alternative antigens to design PCVs for low TMB cancers. To this end, we substantiate endogenous retroviral elements (EVEs) as tumor antigens through large-scale genomic analyses of healthy tissues and solid cancers. These analyses revealed that the breadth of EVE expression in tumors stratify checkpoint inhibitor-treated melanoma patients into groups with differential overall and progression-free survival. To enable the design of PCVs containing EVE-derived epitopes with therapeutic potential, we developed a computational pipeline, ObsERV. We show that EVE-derived peptides are presented as epitopes on tumors and can be predicted by ObsERV. Preclinical testing of ObsERV demonstrates induction of sustained poly-functional CD4+ and CD8+ T-cell responses as well as long-term tumor protection. As such, EVEs may facilitate and improve PCVs, especially for low-TMB patients.

Identifiers

PMID40113807
PMCPMC11926357

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.