Evidence map›Paper›PMID 40113771›Full record

ArticleNature communications2025

High-order Michaelis-Menten equations allow inference of hidden kinetic parameters in enzyme catalysis.

Divya Singh, Tal Robin, Michael Urbakh, Shlomi Reuveni

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Divya SinghSchool of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, 6997801, Tel Aviv, Israel.ORCID http://orcid.org/0009-0005-8564-7966
Tal RobinDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, 10032, USA.
Michael UrbakhSchool of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, 6997801, Tel Aviv, Israel.ORCID http://orcid.org/0000-0002-3959-5414
Shlomi ReuveniSchool of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, 6997801, Tel Aviv, Israel. shlomire@tauex.tau.ac.il.ORCID http://orcid.org/0000-0003-2292-8005

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 947731
6 · The paper itself

Abstract

Single-molecule measurements provide a platform for investigating the dynamical properties of enzymatic reactions. To this end, the single-molecule Michaelis-Menten equation was instrumental as it asserts that the first moment of the enzymatic turnover time depends linearly on the reciprocal of the substrate concentration. This, in turn, provides robust and convenient means to determine the maximal turnover rate and the Michaelis-Menten constant. Yet, the information provided by these parameters is incomplete and does not allow access to key observables such as the lifetime of the enzyme-substrate complex, the rate of substrate-enzyme binding, and the probability of successful product formation. Here we show that these quantities and others can be inferred via a set of high-order Michaelis-Menten equations that we derive. These equations capture universal linear relations between the reciprocal of the substrate concentration and distinguished combinations of turnover time moments, essentially generalizing the Michaelis-Menten equation to moments of any order. We demonstrate how key observables such as the lifetime of the enzyme-substrate complex, the rate of substrate-enzyme binding, and the probability of successful product formation, can all be inferred using these high-order Michaelis-Menten equations. We test our inference procedure to show that it is robust, producing accurate results with only several thousand turnover events per substrate concentration.

Indexed as

BiocatalysisEnzymesModels, ChemicalCatalysisKineticsProtein BindingSubstrate SpecificityEnzymes

Identifiers

PMID40113771
PMCPMC11926178

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