Evidence map›Paper›PMID 40113666›Full record

ArticleMicrobial biotechnology2025

Model-Driven Engineering of Yarrowia lipolytica for Improved Microbial Oil Production.

Zeynep Efsun Duman-Özdamar, Mattijs K Julsing, Vitor A P Martins Dos Santos, Jeroen Hugenholtz, Maria Suarez-Diez

Abstract read
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Frontiers in bioengineering and biotechnology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zeynep Efsun Duman-ÖzdamarBioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.ORCID https://orcid.org/0000-0003-4152-3687
Mattijs K JulsingWageningen Food & Biobased Research, Wageningen University & Research, Wageningen, The Netherlands.
Vitor A P Martins Dos SantosBioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.
Jeroen HugenholtzFaculty of Science Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Maria Suarez-DiezLaboratory of Systems and Synthetic Biology, Wageningen University & Research, Wageningen, The Netherlands.ORCID https://orcid.org/0000-0001-5845-146X

Funding

project partners SEPPIC, Duynie Holding BV, and Diversey NLTKI Agri & Food LWV19221
6 · The paper itself

Abstract

Extensive usage of plant-based oils, especially palm oil, has led to environmental and social issues, such as deforestation and loss of biodiversity, thus sustainable alternatives are required. Microbial oils, especially from Yarrowia lipolytica, offer a promising solution because of their similar composition to palm oil, low carbon footprint and ability to utilise low-cost substrates. In this study, we employed the Design-Build-Test-Learn (DBTL) approach to enhance lipid production in Y. lipolytica. We systematically evaluated predictions from the genome-scale metabolic model to identify and overcome bottlenecks in lipid biosynthesis. We tested the effect of predicted medium supplements (glutamate, leucine, methionine and threonine) and genetic intervention targets, including the overexpression of ATP-citrate lyase (ACL), acetyl-CoA carboxylase (ACC), threonine synthase (TS), diacylglycerol acyltransferase(DGA1), the deletion of citrate exporter gene (CEX1) and disruption of β-oxidation pathway (MFE1). This work revealed the critical roles of ACC, ACL, TS and DGA1 and the interaction of these genes with elevated intracellular citrate availability in lipid biosynthesis. Combining TS and DGA1 overexpression in the Δmfe_Δcex background achieved a remarkable 200% increase in lipid content (56% w/w) and a 230% increase in lipid yield on glycerol. These findings underscore the potential of Y. lipolytica as an efficient microbial cell factory for fatty acid production. Our study advances the understanding of lipid metabolism in Y. lipolytica and demonstrates a viable approach for developing sustainable and economically feasible alternatives to palm oil.

Indexed as

Metabolic EngineeringYarrowiaCulture MediaMetabolic Networks and PathwaysCulture Mediaconstraint‐based GEM modelDBTL cyclemicrobial oiloleaginous yeastYarrowia lipolytica

Identifiers

PMID40113666
PMCPMC11925697

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.