Evidence map›Paper›PMID 40112858›Full record

ArticlePlant physiology2025

Target of rapamycin signaling regulates starch degradation via α-glucan water dikinase in a unicellular red alga.

Sota Komiya, Imran Pancha, Hiroki Shima, Kazuhiko Igarashi, Kan Tanaka, Sousuke Imamura

Abstract read
In one paragraph

Article in Plant physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Focus on algae and aquatic plants.Plant physiology · 2026
    Article
  2. Article
  3. Article
  4. A structural perspective on α-glucan catabolism in oxygenic phototrophs.The Plant journal : for cell and molecular biology · 2026
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sota KomiyaLaboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259-R1 Nagatsutacho, Midori-ku, Yokohama 226-8503, Japan.ORCID 0009-0001-9688-2938
Imran PanchaLaboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259-R1 Nagatsutacho, Midori-ku, Yokohama 226-8503, Japan.
Hiroki ShimaDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Seiryo-machi 2-1, Aoba-ku, Sendai 980-8575, Japan.ORCID 0000-0001-8681-8337
Kazuhiko IgarashiDepartment of Biochemistry, Tohoku University Graduate School of Medicine, Seiryo-machi 2-1, Aoba-ku, Sendai 980-8575, Japan.ORCID 0000-0002-2470-2475
Kan TanakaLaboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259-R1 Nagatsutacho, Midori-ku, Yokohama 226-8503, Japan.ORCID 0000-0001-7560-7884
Sousuke ImamuraLaboratory for Chemistry and Life Science, Institute of Integrated Research, Institute of Science Tokyo, 4259-R1 Nagatsutacho, Midori-ku, Yokohama 226-8503, Japan.ORCID 0000-0002-3040-4757

Funding

JSPS postdoctoral research 16F16399Takeda Science Foundation
6 · The paper itself

Abstract

Target of rapamycin (TOR) signaling pathways are major regulators of starch accumulation in various eukaryotes. However, the underlying molecular mechanisms of this regulation remain elusive. Here, we report the role of TOR signaling in starch degradation in the unicellular red alga Cyanidioschyzon merolae. Reanalysis of our previously published phosphoproteome data showed that phosphorylation of the serine residue at position 264 of a protein similar to α-glucan water dikinase (CmGWD), a key regulator of starch degradation, was not increased by rapamycin treatment. In the CmGWD knockout strain, starch content increased and starch phosphorylation decreased, indicating that CmGWD is a functional GWD. CmGWD-dependent starch degradation under dark conditions was alleviated by rapamycin treatment. The overexpression of a phosphomimic CmGWD variant, in which Ser264 was replaced by aspartic acid, or a dephosphomimic CmGWD variant, in which Ser264 was replaced by alanine, resulted in 0.6-fold lower and 1.6-fold higher starch accumulation compared to the wild-type CmGWD-overexpressing strain, respectively. The starch levels corresponded with starch phosphorylation status. Furthermore, the dephosphomimic CmGWD-overexpressing strain accumulated nearly the same amount of starch with or without rapamycin treatment as the rapamycin-treated wild-type CmGWD-overexpressing strain. In contrast, rapamycin treatment did not trigger an increase in starch accumulation in the phosphomimic CmGWD-overexpressing strain. These results indicate that TOR signaling regulates starch degradation in C. merolae by altering the phosphorylation state of Ser264 in CmGWD.

Indexed as

Phosphotransferases (Paired Acceptors)RhodophytaSignal TransductionStarchTOR Serine-Threonine KinasesAlgal ProteinsPhosphorylationSirolimusAlgal ProteinsPhosphotransferases (Paired Acceptors)SirolimusStarchTOR Serine-Threonine Kinases

Identifiers

PMID40112858
PMCPMC11986951

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.