Evidence map›Paper›PMID 40112060›Full record

ArticleScience (New York, N.Y.)2025

Synaptic architecture of a memory engram in the mouse hippocampus.

Marco Uytiepo, Yongchuan Zhu, Eric Bushong, Katherine Chou, Filip Souza Polli, Elise Zhao, Keun-Young Kim, Danielle Luu, Lyanne Chang, Dong Yang and 18 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Glial cells in neuropathic pain.Physiological reviews · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. RAEM: random-access electron microscopy for revisitable 3D imaging.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. CA1 Engram Cell Dynamics Before and After Learning.bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Transsynaptic linking of calcium channels and postsynaptic receptors at a dyadic synapse.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. Reductionism in Engram Neuroscience.The European journal of neuroscience · 2026
    Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Marco Uytiepo *Department of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0009-0005-1615-130X
Yongchuan Zhu *Department of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Eric BushongNational Center for Microscopy and Imaging Research, University of California, San Diego, San Diego, CA, USA.ORCID 0000-0001-6195-2433
Katherine ChouDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Filip Souza PolliDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0002-3854-9918
Elise ZhaoDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Keun-Young KimNational Center for Microscopy and Imaging Research, University of California, San Diego, San Diego, CA, USA.
Danielle LuuDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Lyanne ChangDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0009-0004-6649-3511
Dong YangDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0003-0612-1439
Tsz Ching MaDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0003-0001-9011
Mingi KimDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0001-8063-6911
Yuting ZhangDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0009-0004-2182-679X
Grant WaltonDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Tom QuachDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Matthias HaberlNational Center for Microscopy and Imaging Research, University of California, San Diego, San Diego, CA, USA.ORCID 0000-0002-4961-7832
Luca PatapoutianDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Arya ShahbaziDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Yuxuan ZhangDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Elizabeth BeutterDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Weiheng ZhangDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Brian DongDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Aureliano KhouryDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Alton GuDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.
Elle McCueDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0009-0004-4484-9003
Lisa StowersDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0002-4403-1269
Mark EllismanNational Center for Microscopy and Imaging Research, University of California, San Diego, San Diego, CA, USA.ORCID 0000-0001-8893-8455
Anton MaximovDepartment of Neuroscience, The Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0001-6186-4572

Funding

Cell Specific Perturbations of the Proteome in Alzheimer's DiseaseR01AG075862 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI MAXIMOV, ANTON, PETRASCHECK, MICHAEL · 2021 to 2025
$6.6M
Transcriptional Control of Synaptic Plasticity by Class IIa HDACsR01NS087026 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI MAXIMOV, ANTON · 2015 to 2024
$5.4M
Molecular mechanisms of structural plasticity of inhibitory GABAergic interneuronsR01MH118442 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI MAXIMOV, ANTON · 2019 to 2023
$3.4M
New approaches for chemical-genetic targeting of specific circuits and cell types in the mammalian brainRF1MH123224 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI MAXIMOV, ANTON · 2020 to 2020
$2.7M
NIA NIH HHS R01 AG075862NIMH NIH HHS R01 MH118442NIMH NIH HHS RF1 MH123224NINDS NIH HHS R01 NS087026
6 · The paper itself

Abstract

Memory engrams are formed through experience-dependent plasticity of neural circuits, but their detailed architectures remain unresolved. Using three-dimensional electron microscopy, we performed nanoscale reconstructions of the hippocampal CA3-CA1 pathway after chemogenetic labeling of cellular ensembles recruited during associative learning. Neurons with a remote history of activity coinciding with memory acquisition showed no strong preference for wiring with each other. Instead, their connectomes expanded through multisynaptic boutons independently of the coactivation state of postsynaptic partners. The rewiring of ensembles representing an initial engram was accompanied by input-specific, spatially restricted upscaling of individual synapses, as well as remodeling of mitochondria, smooth endoplasmic reticulum, and interactions with astrocytes. Our findings elucidate the physical hallmarks of long-term memory and offer a structural basis for the cellular flexibility of information coding.

Indexed as

CA1 Region, HippocampalCA3 Region, HippocampalHippocampusMemory, Long-TermSynapsesAnimalsAstrocytesConnectomeMaleMiceMice, Inbred C57BLMitochondriaNeuronal PlasticityNeuronsPresynaptic TerminalsVolume Electron Microscopy

Identifiers

PMID40112060
PMCPMC12233322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.