Evidence map›Paper›PMID 40110710›Full record

ArticleJournal of cell science2025

Rab40 GTPases regulate AMBRA1-mediated transcription and cell migration.

Revathi Sampath, Katherine Vaeth, Valeryia Mikalayeva, Vytenis Arvydas Skeberdis, Rytis Prekeris, Ke-Jun Han

Abstract read
In one paragraph

Article in Journal of cell science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Revathi SampathThe Laboratory of Cell Culture, Lithuanian University of Health Sciences, Kaunas, 50103, Lithuania.
Katherine VaethDepartment of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Valeryia MikalayevaThe Laboratory of Cell Culture, Lithuanian University of Health Sciences, Kaunas, 50103, Lithuania.
Vytenis Arvydas SkeberdisThe Laboratory of Cell Culture, Lithuanian University of Health Sciences, Kaunas, 50103, Lithuania.
Rytis PrekerisThe Laboratory of Cell Culture, Lithuanian University of Health Sciences, Kaunas, 50103, Lithuania.ORCID 0000-0003-3393-1963
Ke-Jun HanDepartment of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.ORCID 0009-0003-1698-4542

Funding

Predoctoral Training Program in Molecular and Cellular Biology (Supplement: Mentoring in the Research Environment)T32GM136444 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MICHAEL A MCMURRAY, Rytis Prekeris · 2020 to 2026
$3.7M
The mechanisms regulating actin dynamics and polarized membrane transport during invadopodia formationR01GM122768 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS · 2018 to 2025
$2.6M
The roles of midbody associated mRNAs in regulating cell proliferation and differentiationR01GM143774 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, RAPOSO, GRACA GRACA · 2021 to 2024
$1.7M
Diversity Supplement GM143774-02S1Lietuvos Mokslo Taryba S-MIP-22-60NIGMS NIH HHS R01 GM122768NIGMS NIH HHS R01 GM143774NIGMS NIH HHS T32 GM136444NIH HHS R01 GM122768Research Council of Lithuania S-MIP-22-60University of Colorado Denver
6 · The paper itself

Abstract

The Rab40 subfamily of proteins consists of unique small monomeric GTPases that form CRL5-based ubiquitin E3 ligase complexes and regulate ubiquitylation of specific target proteins. Recent studies have shown that Rab40 proteins play an important role in regulating cell migration, but the underlying mechanisms of how the Rab40-CRL5 complex functions are still not fully understood. In this study, we identified AMBRA1 as a novel binding partner of Rab40 GTPases and show that this interaction mediates a bidirectional crosstalk between the CRL4 and CRL5 E3 ligases. Importantly, we found that Rab40-CRL5 ubiquitylates AMBRA1, which does not result in AMBRA1 degradation but, instead, appears to induce AMBRA1-dependent regulation of gene transcription. The global transcriptional profiles identified by RNA sequencing showed that AMBRA1 regulates transcription of genes related to cell adhesion and migration. Additionally, we show that AMBRA1-dependent transcription regulation does not require the enzymatic activity of AMBRA1-CRL4, and that Rab40-induced AMBRA1 ubiquitylation leads to dissociation of the AMBRA1-CRL4 complex. Taken together, our findings reveal a novel function of the Rab40-CRL5 complex as an important regulator of AMBRA1-dependent transcription of genes involved in cell migration.

Indexed as

Adaptor Proteins, Signal TransducingCell Movementrab GTP-Binding ProteinsTranscription, GeneticHEK293 CellsHeLa CellsHumansProtein BindingUbiquitinationUbiquitin-Protein LigasesAdaptor Proteins, Signal Transducingrab GTP-Binding ProteinsUbiquitin-Protein LigasesAMBRA1Cell migrationRab40 GTPaseUbiquitylation

Identifiers

PMID40110710
PMCPMC12045048

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.