Evidence map›Paper›PMID 40109972›Full record

ArticleFrontiers in microbiology2025

HPV integration profiling using nanopore sequencing and association with cervical precancerous lesion.

Ying Hou, Shoufeng Ni, Xin Liu, Xingyu Liu, Nan Wang, Fuqiang Xu, Jianyong Gao, Yanmei Li, Yuxiang Zhou, Huadong Tang and 5 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Automated acquisition of explainable knowledge from unannotated colposcopic images for predicting the natural course of CIN2.International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ying Hou *Department of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Shoufeng Ni *Geneis Beijing Co., Ltd., Beijing, China.
Xin LiuDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Xingyu LiuGeneis Beijing Co., Ltd., Beijing, China.
Nan WangDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Fuqiang XuDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Jianyong GaoGeneis Beijing Co., Ltd., Beijing, China.
Yanmei LiDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Yuxiang ZhouDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Huadong TangDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Meina BianDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Xiulan LiDepartment of Gynecology, Beijing Youan Hospital, Capital Medical University, Beijing, China.
Lili ZhangGeneis Beijing Co., Ltd., Beijing, China.
Weiwei WangGeneis Beijing Co., Ltd., Beijing, China.
Qing LiuCapitalBio Technology Corporation, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: HPV infection and HPV DNA integration can lead to cervical cancer, but the relationship with lesion severity is unclear. This study aimed to investigate the correlation between HPV integration profile and cervical lesion extent. Materials and methods: Twenty patients representing cervicitis, CIN I, CIN II, and CIN III underwent nanopore sequencing for HPV genotype and integration site analysis. HPV integration profiles were correlated with lesion severity. Gene Ontology (GO) and KEGG analysis were used to identify stage-specific genes and pathways. Results: HPV integration rates were 60, 60, 100, and 100% for cervicitis, CIN I, CIN II, and CIN III, respectively, with varying numbers of integrated genes. Each group had specific stage-related genes, with 83 shared genes linked to neuron development and cell-cell processes. CIN II and CIN III displayed more cancer-related pathway enrichment than earlier stages. Conclusion: A positive correlation exists between HPV integration frequency and cervical lesion stage. Late-stage lesions showed heightened enrichment in cancer-related pathways through specific HPV-integrated genes.

Indexed as

cervical cancercervical lesionshuman papillomavirusnanopore sequencingvirus integration

Identifiers

PMID40109972
PMCPMC11920162

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.