Evidence map›Paper›PMID 40108841›Full record

ArticleEnvironmental microbiology2025

Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter.

Zachary A Quinlan, Craig E Nelson, Irina Koester, Daniel Petras, Louis-Felix Nothias, Jacqueline Comstock, Brandie M White, Lihini I Aluwihare, Barbara A Bailey, Craig A Carlson and 3 more

Abstract read
In one paragraph

Article in Environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Zachary A QuinlanScripps Institution of Oceanography, UC San Diego, La Jolla, California, USA.ORCID https://orcid.org/0000-0002-0351-8927
Craig E NelsonDaniel K. Inouye Center for Microbial Oceanography: Research and Education, Department of Oceanography and Sea Grant College Program, School of Ocean and Earth Science and Technology, University of Hawai'i at Mānoa, Honolulu, Hawai'i, USA.ORCID https://orcid.org/0000-0003-2525-3496
Irina KoesterScripps Institution of Oceanography, UC San Diego, La Jolla, California, USA.
Daniel PetrasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, California, USA.
Louis-Felix NothiasCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, California, USA.
Jacqueline ComstockDepartment of Ecology, Evolution and Marine Biology and Marine Science Institute, University of California, Santa Barbara, California, USA.
Brandie M WhiteDepartment of Mathematics and Statistics, San Diego State University, San Diego, California, USA.
Lihini I AluwihareScripps Institution of Oceanography, UC San Diego, La Jolla, California, USA.
Barbara A BaileyDepartment of Mathematics and Statistics, San Diego State University, San Diego, California, USA.
Craig A CarlsonDepartment of Ecology, Evolution and Marine Biology and Marine Science Institute, University of California, Santa Barbara, California, USA.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, California, USA.
Andreas F HaasNIOZ Royal Netherlands Institute for Sea Research and Utrecht University, Texel, the Netherlands.
Linda Wegley KellyScripps Institution of Oceanography, UC San Diego, La Jolla, California, USA.ORCID https://orcid.org/0000-0002-9157-4426

Funding

Hawaii Sea Grant publication 4949National Oceanic and Atmospheric Administration ProjectA/AS-1SOEST 11904University of Hawaii Sea Grant College Program, School of Ocean and Earth Science and Technology (SOEST) NA24OARX417C0024-T1-01US National Science Foundation GRFP-2019252845US National Science Foundation OCE-2023298US National Science Foundation OCE-2023509US National Science Foundation OCE-2118617US National Science Foundation OCE-2118618US National Science Foundation, Moorea Coral Reef Long-Term Ecological Research OCE-1637396
6 · The paper itself

Abstract

Dissolved organic matter (DOM) comprises diverse compounds with variable bioavailability across aquatic ecosystems. The sources and quantities of DOM can influence microbial growth and community structure with effects on biogeochemical processes. To investigate the chemodiversity of labile DOM in tropical reef waters, we tracked microbial utilisation of over 3000 untargeted mass spectrometry ion features exuded from two coral and three algal species. Roughly half of these features clustered into over 500 biologically labile spectral subnetworks annotated to diverse structural superclasses, including benzenoids, lipids, organic acids, heterocyclics and phenylpropanoids, comprising on average one-third of the ion richness and abundance within each chemical class. Distinct subsets of these labile compounds were exuded by algae and corals during the day and night, driving differential microbial growth and substrate utilisation. This study expands the chemical diversity of labile marine DOM with implications for carbon cycling in coastal environments.

Indexed as

AnthozoaBacteriaCoral ReefsDissolved Organic MatterMicrobiotaAnimalsMass SpectrometryOrganic ChemicalsSeawaterDissolved Organic MatterOrganic Chemicalscoral reefsdissolved organic matterexometabolomemarine microbesmolecular networkingtandem mass spectrometry

Identifiers

PMID40108841
PMCPMC11923415

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.