Evidence map›Paper›PMID 40108454›Full record

ArticleNature2025

Transient silencing of hypermutation preserves B cell affinity during clonal bursting.

Juhee Pae, Niklas Schwan, Bertrand Ottino-Loffler, William S DeWitt, Amar Garg, Juliana Bortolatto, Ashni A Vora, Jin-Jie Shen, Alvaro Hobbs, Tiago B R Castro and 4 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Highlights of 2025: advances in germinal centers.Immunology and cell biology · 2026
    Review
  9. Article
  10. Article
  11. Clonal dynamics of germinal center refueling by secondary immunization.bioRxiv : the preprint server for biology · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Juhee PaeLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Niklas Schwan *Department of Systems Immunology, Helmholtz Center for Infection Research, Braunschweig, Germany.
Bertrand Ottino-Loffler *Center for Studies in Physics and Biology, The Rockefeller University, New York, NY, USA.
William S DeWitt *Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Amar Garg *Department of Systems Immunology, Helmholtz Center for Infection Research, Braunschweig, Germany.
Juliana BortolattoLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Ashni A VoraLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Jin-Jie ShenLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-2567-8470
Alvaro HobbsLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Tiago B R CastroLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-0359-0611
Luka MesinLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Frederick A MatsenDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0003-0607-6025
Michael Meyer-HermannDepartment of Systems Immunology, Helmholtz Center for Infection Research, Braunschweig, Germany.ORCID 0000-0002-4300-2474
Gabriel D VictoraLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA. victora@rockefeller.edu.ORCID 0000-0001-8807-348X

Funding

Dynamics of Antigen-Driven Selection in Germinal CentersR01AI119006 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2017 to 2026
$5.7M
B cell clonal selection in gut-associated germinal centersR01AI157137 · NIAID · ROCKEFELLER UNIVERSITY · PI Daniel S Mucida, Gabriel D Victora · 2020 to 2026
$4.8M
Defining the role of T cell help in germinal centers by intercellular enzymatic labelingR01AI173086 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2022 to 2026
$4.0M
Molecular control of germinal center selection and affinity maturationR01AI139117 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2018 to 2026
$3.9M
Blending deep learning with probabilistic mechanistic models to predict and understand the evolution and function of adaptive immune receptorsR01AI146028 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MATSEN, FREDERICK ALBERT · 2019 to 2024
$3.4M
European Union’s Horizon 2020 research and innovation programmeNIAID NIH HHS R01 AI119006NIAID NIH HHS R01 AI139117NIAID NIH HHS R01 AI146028NIAID NIH HHS R01 AI157137NIAID NIH HHS R01 AI173086
6 · The paper itself

Abstract

In the course of antibody affinity maturation, germinal centre (GC) B cells mutate their immunoglobulin heavy- and light-chain genes in a process known as somatic hypermutation (SHM)

Indexed as

Antibody AffinityB-LymphocytesClone CellsGene SilencingSomatic Hypermutation, ImmunoglobulinAnimalsCell CycleCell ProliferationCyclin-Dependent Kinase 2FemaleGerminal CenterMaleMiceMice, Inbred C57BLCyclin-Dependent Kinase 2

Identifiers

PMID40108454
PMCPMC12058519

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.