Evidence map›Paper›PMID 40108178›Full record

ArticleNature communications2025

Clade-specific extracellular vesicles from Akkermansia muciniphila mediate competitive colonization via direct inhibition and immune stimulation.

Moon-Gi Hong, Eun-Ji Song, Hye Jin Yoon, Won-Hyong Chung, Hae Yeong Seo, Dohak Kim, Dokyung Lee, Jae-Gu Seo, Hayoung Lee, Seung Il Kim and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Effect of pasteurizedGut microbes · 2026
    Trial
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Unveiling the Molecular Repertoire ofJournal of microbiology and biotechnology · 2026
    Review
  9. ProbioticVeterinary sciences · 2026
    Article
  10. Frontiers in microbiology · 2026
    Review
  11. Review
  12. Review
  13. Extracellular vesicles from pasteurizedFrontiers in microbiology · 2026
    Article
  14. Article
  15. Review
  16. The Biology ofAnnual review of microbiology · 2025
    Review
  17. Review
  18. Review
  19. Review
  20. Investigating the role ofFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Moon-Gi Hong *R&D Center, Enterobiome Inc., 814 Siksa-dong, Ilsandong-gu, Goyang-si, Republic of Korea.ORCID http://orcid.org/0000-0003-1738-8542
Eun-Ji Song *Research Group of Personalized Diet, Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do, Republic of Korea.ORCID http://orcid.org/0000-0002-7448-5026
Hye Jin Yoon *Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea.
Won-Hyong ChungResearch Group of Personalized Diet, Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do, Republic of Korea.
Hae Yeong SeoDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea.
Dohak KimR&D Center, Enterobiome Inc., 814 Siksa-dong, Ilsandong-gu, Goyang-si, Republic of Korea.
Dokyung LeeR&D Center, Enterobiome Inc., 814 Siksa-dong, Ilsandong-gu, Goyang-si, Republic of Korea.
Jae-Gu SeoR&D Center, Enterobiome Inc., 814 Siksa-dong, Ilsandong-gu, Goyang-si, Republic of Korea.
Hayoung LeeDigital Omics Research Center, Korea Basic Science Institute, Cheongju, Republic of Korea.
Seung Il KimDigital Omics Research Center, Korea Basic Science Institute, Cheongju, Republic of Korea.
Gwang Joong KimGwangju Center, Korea Basic Science Institute (KBSI), Gwangju, Republic of Korea.
Kil-Nam KimGwangju Center, Korea Basic Science Institute (KBSI), Gwangju, Republic of Korea.
Sang-Nam LeeR&D Center, Enterobiome Inc., 814 Siksa-dong, Ilsandong-gu, Goyang-si, Republic of Korea. snlee@enterobiome.com.ORCID http://orcid.org/0000-0002-7298-0138
Kwang Soon KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea. kskim27@postech.ac.kr.ORCID http://orcid.org/0000-0002-6250-1068
Young-Do NamResearch Group of Personalized Diet, Korea Food Research Institute, 245 Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do, Republic of Korea. youngdo98@kfri.re.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Akkermansia muciniphila, a promising candidate for next-generation probiotics, exhibits significant genomic diversity, classified into several distinct clades (AmI to AmIV). Notably, a single Akkermansia clade tends to predominate within individual hosts, with co-occurrence of different clades being rare. The mechanisms driving such clade-specific exclusion remain unclear. Here, we show that extracellular vesicles (EVs) derived from AmII clade inhibit the growth of clade I (AmI), conferring a competitive advantage to AmII. Moreover, we observe clade-specific immunoglobulin A (IgA) responses, where AmII clade-specific IgAs, induced by EVs from AmII, facilitate niche occupancy and competitive exclusion of AmI. These findings provide insights into the competitive dynamics of A. muciniphila clades and suggest that future personalized microbiome interventions could be optimized by considering the clade composition of A. muciniphila in individual hosts.

Indexed as

AkkermansiaExtracellular VesiclesVerrucomicrobiaAnimalsFemaleGastrointestinal MicrobiomeHumansImmunoglobulin AMiceProbioticsImmunoglobulin A

Identifiers

PMID40108178
PMCPMC11923206

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.