Evidence map›Paper›PMID 40108146›Full record

ArticleScientific data2025

A large-scale multicenter breast cancer DCE-MRI benchmark dataset with expert segmentations.

Lidia Garrucho, Kaisar Kushibar, Claire-Anne Reidel, Smriti Joshi, Richard Osuala, Apostolia Tsirikoglou, Maciej Bobowicz, Javier Del Riego, Alessandro Catanese, Katarzyna Gwoździewicz and 23 more

Abstract readDatasetMulticenter Study
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Lidia GarruchoBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain. lgarrucho@ub.edu.ORCID http://orcid.org/0000-0002-3105-2773
Kaisar KushibarBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.ORCID http://orcid.org/0000-0001-7507-5208
Claire-Anne ReidelBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Smriti JoshiBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Richard OsualaBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Apostolia TsirikoglouDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Maciej Bobowicz2nd Dept. of Radiology, Medical University of Gdansk, Gdansk, Poland.ORCID http://orcid.org/0000-0002-3608-1960
Javier Del RiegoÁrea de Radiología Mamaria y Ginecológica (UDIAT CD), Parc Taulí Hospital Universitari, Sabadell, Spain.
Alessandro CataneseUnitat de Diagnòstic per la Imatge de la Mama (UDIM), Hospital Germans Trias i Pujol, Badalona, Spain.ORCID http://orcid.org/0000-0002-2472-2839
Katarzyna Gwoździewicz2nd Dept. of Radiology, Medical University of Gdansk, Gdansk, Poland.
Maria-Laura CosakaCentro Mamario Instituto Alexander Fleming, Buenos Aires, Argentina.
Pasant M Abo-ElhodaDepartment of Diagnostic & Interventional Radiology and Molecular Imaging, Faculty of Medicine, Ain Shams University, Cairo, Egypt.ORCID http://orcid.org/0000-0001-5385-0509
Sara W TantawyDepartment of Diagnostic & Interventional Radiology and Molecular Imaging, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Shorouq S SakranaDepartment of Diagnostic & Interventional Radiology and Molecular Imaging, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Norhan O Shawky-AbdelfatahDepartment of Diagnostic & Interventional Radiology and Molecular Imaging, Faculty of Medicine, Ain Shams University, Cairo, Egypt.
Amr Muhammad Abdo SalemDepartment of Diagnostic & Interventional Radiology and Molecular Imaging, Faculty of Medicine, Ain Shams University, Cairo, Egypt.ORCID http://orcid.org/0000-0001-8167-7029
Androniki KozanaDepartment of Radiology, University Hospital of Heraklion, Stavrakia, Greece.
Eugen DivjakDepartment of Diagnostic and Interventional Radiology, University Hospital Dubrava, Zagreb, Croatia.ORCID http://orcid.org/0000-0002-9709-5450
Gordana IvanacDepartment of Diagnostic and Interventional Radiology, University Hospital Dubrava, Zagreb, Croatia.
Katerina NikiforakiComputational BioMedicine Laboratory, Institute of Computer Science, Foundation for Research and Technology-Hellas, Heraklion, Greece.
Michail E KlontzasDepartment of Radiology, School of Medicine, University of Crete, Heraklion, Greece.ORCID http://orcid.org/0000-0003-2731-933X
Rosa García-DosdáMedical Imaging and Radiology, Universitary and Politechnic Hospital La Fe, Valencia, Spain.
Meltem Gulsun-AkpinarDepartment of Radiology, Hacettepe University Faculty of Medicine Sihhiye, Ankara, Turkey.
Oğuz LafcıDepartment of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Vienna, Austria.
Ritse MannDepartment of Radiology and Nuclear Medicine, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-8111-1930
Carlos Martín-IslaBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Fred PriorUniversity of Arkansas for Medical Sciences, Little Rock, AR, US.ORCID http://orcid.org/0000-0002-6314-5683
Kostas MariasDepartment of Electrical and Computer Engineering, Hellenic Mediterranean University, Heraklion, Greece.
Martijn P A StarmansDepartment of Radiology and Nuclear Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands.
Fredrik StrandDepartment of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Oliver DíazBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Laura IgualBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.
Karim LekadirBarcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes 585, 08007, Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Artificial Intelligence (AI) research in breast cancer Magnetic Resonance Imaging (MRI) faces challenges due to limited expert-labeled segmentations. To address this, we present a multicenter dataset of 1506 pre-treatment T1-weighted dynamic contrast-enhanced MRI cases, including expert annotations of primary tumors and non-mass-enhanced regions. The dataset integrates imaging data from four collections in The Cancer Imaging Archive (TCIA), where only 163 cases with expert segmentations were initially available. To facilitate the annotation process, a deep learning model was trained to produce preliminary segmentations for the remaining cases. These were subsequently corrected and verified by 16 breast cancer experts (averaging 9 years of experience), creating a fully annotated dataset. Additionally, the dataset includes 49 harmonized clinical and demographic variables, as well as pre-trained weights for a baseline nnU-Net model trained on the annotated data. This resource addresses a critical gap in publicly available breast cancer datasets, enabling the development, validation, and benchmarking of advanced deep learning models, thus driving progress in breast cancer diagnostics, treatment response prediction, and personalized care.

Indexed as

Breast NeoplasmsMagnetic Resonance ImagingArtificial IntelligenceBenchmarkingContrast MediaDeep LearningDynamic Contrast Enhanced Magnetic Resonance ImagingFemaleHumansContrast Media

Identifiers

PMID40108146
PMCPMC11923173

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.