Evidence map›Paper›PMID 40107319›Full record

ArticleThe New phytologist2025

In a nutshell: pistachio genome and kernel development.

Jaclyn A Adaskaveg, Chaehee Lee, Yiduo Wei, Fangyi Wang, Filipa S Grilo, Saskia D Mesquida-Pesci, Matthew Davis, Selina C Wang, Giulia Marino, Louise Ferguson and 13 more

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Management and Genetic Diversity of an ItalianInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Jaclyn A Adaskaveg *Department of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-3408-5984
Chaehee Lee *Department of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0003-3214-2997
Yiduo WeiDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0009-0005-3643-5086
Fangyi WangDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0003-2687-9909
Filipa S GriloCorto Olive, Lodi, CA, 95212, USA.ORCID 0000-0003-3535-4776
Saskia D Mesquida-PesciDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-4182-5039
Matthew DavisDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0009-0004-8933-349X
Selina C WangDepartment of Food Science and Technology, University of California Davis, Davis, CA, 95616, USA.ORCID 0000-0002-9030-837X
Giulia MarinoDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-2577-1974
Louise FergusonDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-9520-078X
Patrick J BrownDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0003-1332-711X
Georgia DrakakakiDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-3949-8657
Adela Mena MoralesRegional Institute of Agri-Food and Forestry Research and Development of Castilla-La Mancha (IRIAF), IVICAM, CTRA, Toledo-Albacete s/n, 13700, Tomelloso (Ciudad Real), 13700, Spain.ORCID 0000-0001-6342-209X
Annalisa MarcheseDepartment of Agricultural, Food and Forest Sciences, University of Palermo, Viale delle Scienze - Ed. 4, Palermo, 90128, Italy.ORCID 0000-0002-6816-6184
Antonio GiovinoCREA for Agricultural Research and Economics (CREA), Research Centre for Plant Protection and Certification (CREA-DC), Viale delle Scienze, Palermo, 90128, Italy.ORCID 0000-0001-5501-0204
Esaú Martínez BurgosRegional Institute of Agri-Food and Forestry Research and Development of Castilla-La Mancha (IRIAF), IVICAM, CTRA, Toledo-Albacete s/n, 13700, Tomelloso (Ciudad Real), 13700, Spain.ORCID 0000-0002-5338-5237
Francesco Paolo MarraDepartment of Agricultural, Food and Forest Sciences, University of Palermo, Viale delle Scienze - Ed. 4, Palermo, 90128, Italy.ORCID 0000-0003-1490-0619
Lourdes Marchante CuevasRegional Institute of Agri-Food and Forestry Research and Development of Castilla-La Mancha (IRIAF), IVICAM, CTRA, Toledo-Albacete s/n, 13700, Tomelloso (Ciudad Real), 13700, Spain.ORCID 0000-0002-0458-8783
Luigi CattivelliCREA Research Centre for Genomics and Bioinformatics, Fiorenzuola d'Arda, 29017, Italy.ORCID 0000-0002-6067-4600
Paolo BagnaresiCREA Research Centre for Genomics and Bioinformatics, Fiorenzuola d'Arda, 29017, Italy.ORCID 0000-0001-8466-4805
Pablo Carbonell-BejeranoInstituto de Ciencias de la Vid y del Vino, ICVV, for Grape and Wine Sciences ICVV, CSIC - Universidad de La Rioja - Gobierno de La Rioja, Logroño, 26007, Spain.ORCID 0000-0002-7266-9665
J Grey MonroeDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-4025-5572
Barbara Blanco-UlateDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.ORCID 0000-0002-8819-9207

Funding

California Pistachio Research Board HC-2019-15-0California Pistachio Research Board HG-2022-35California Pistachio Research Board HP-2020-28California Pistachio Research Board HP-2021-37-0Department of Plant Sciences, University of California, DavisFoundation for Food and Agricultural Research'la Caixa' Foundation 100010434National Institute of Food and Agriculture 108681-Z5327202
6 · The paper itself

Abstract

Pistachio is a sustainable nut crop with exceptional climate resilience and nutritional value. However, the molecular processes underlying pistachio nut development and nutritional traits are largely unknown, compounded by limited genomic and molecular resources. To advance pistachios as a future food source and a model system for hard-shelled fruits, we generated a chromosome-scale reference genome of the most widely grown pistachio cultivar (Pistacia vera 'Kerman') and a spatiotemporal study of nut development. We integrated tissue-level physiological data from thousands of nuts over three growing seasons with transcriptomic data encompassing 14 developmental time points of the hull, shell, and kernel to assemble gene modules associated with physiological changes. Our study defined four distinct stages of pistachio nut growth and maturation. We then focused on the kernel to identify transcriptional and metabolic changes in molecular pathways governing nutritional quality, such as the accumulation of unsaturated fatty acids, which are vital for shelf life and dietary value. These findings revealed key candidate conserved regulatory genes, such as PvAP2-WRI1 and PvNFYB-LEC1, likely involved in oil accumulation in kernels. This work yields new knowledge and resources that will inform other woody crops and facilitate further improvement of pistachio as a globally significant, sustainable, and nutritious crop.

Indexed as

Genome, PlantNutsPistaciaGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantTranscriptomechromosome‐scale assemblyKermankernel metabolic profilenut developmentnut physiologypistachioPistacia verareference genomespatiotemporal transcriptometree crop

Identifiers

PMID40107319
PMCPMC11982797

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.