Evidence map›Paper›PMID 40106576›Full record

ArticleGenome biology and evolution2025

Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages.

Rachel E Bainbridge, Joel C Rosenbaum, Paushaly Sau, Anne E Carlson

Abstract read
In one paragraph

Article in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. TheBiomolecules · 2025
    Review
  2. Fertilization in the African clawed frogmicroPublication biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rachel E BainbridgeDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0002-6014-2030
Joel C RosenbaumDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0002-4477-7343
Paushaly SauDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0009-0005-2051-9920
Anne E CarlsonDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0003-2724-1325

Funding

Signaling Mechanisms of TMEM16a RegulationR01GM125638 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CARLSON, ANNE E · 2018 to 2022
$1.6M
Physiologic mechanisms of ion channel regulationR35GM153270 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Anne E Carlson · 2024 to 2026
$1.3M
CMRFNational Institute for Health 1R35GM153270NIGMS NIH HHS R01 GM125638NIGMS NIH HHS R35 GM153270University of PittsburghUniversity of Pittsburgh HSCRF Genomics Research Core RRID: SCR_018301
6 · The paper itself

Abstract

Fertilization triggers a cascade of events, including a rise in egg cytosolic calcium that marks the onset of embryonic development. In mammals and birds, this critical process is mediated by the sperm-derived phospholipase C zeta (PLCζ), which is pivotal in releasing calcium from the endoplasmic reticulum in the egg and initiating embryonic activation. Intriguingly, Xenopus laevis, a key model organism in reproductive biology, lacks an annotated PLCZ1 gene, prompting questions about its calcium release mechanism during fertilization. Using bioinformatics and RNA sequencing of adult X. laevis testes, we investigated the presence of a PLCZ1 ortholog in amphibians. While we identified PLCZ1 homologs in 25 amphibian species, including 14 previously uncharacterized orthologs, we found none in X. laevis or its close relative, Xenopus tropicalis. Additionally, we found no compensatory expression of other PLC isoforms in these species. Synteny analysis revealed a PLCZ1 deletion in species within the Pipidae family and another intriguing deletion of potential sperm factor PLCD4 in the mountain slow frog, Nanorana parkeri. Our findings indicate that the calcium release mechanism in frog eggs involves a signaling pathway distinct from the PLCζ-mediated process observed in mammals.

Indexed as

AmphibiansFertilizationPhosphoinositide Phospholipase CAnimalsFemaleMalePhylogenySpermatozoaXenopus laevisPhosphoinositide Phospholipase Ccomparative genomicsphospholipase Cphylogeneticsreproductive biologyXenopus

Identifiers

PMID40106576
PMCPMC11965574

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.