Evidence map›Paper›PMID 40106547›Full record

ArticleScience advances2025

Phi29 assembly intermediates reveal how scaffold interactions with capsid protein drive capsid construction and maturation.

Michael Woodson, Nikolai S Prokhorov, Seth D Scott, Wei Zhao, Wei Zhang, Kyung H Choi, Paul J Jardine, Marc C Morais

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Michael WoodsonSealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.ORCID 0000-0002-8612-4527
Nikolai S ProkhorovSealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.ORCID 0000-0001-9621-0245
Seth D ScottSealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.
Wei ZhaoDepartment of Diagnostic and Biological Sciences, School of Dentistry, and Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.ORCID 0000-0002-3978-6202
Wei ZhangDepartment of Diagnostic and Biological Sciences, School of Dentistry, and Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.ORCID 0000-0002-9888-3889
Kyung H ChoiSealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.ORCID 0000-0003-0865-1265
Paul J JardineDepartment of Diagnostic and Biological Sciences, School of Dentistry, and Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA.ORCID 0000-0002-1090-0550
Marc C MoraisSealy Center for Structural Biology, The University of Texas Medical Branch at Galveston, Galveston, TX 77555, USA.ORCID 0000-0002-1057-0934

Funding

The DNA Packaging Motor of Bacteriophage phi29R01GM122979 · NIGMS · UNIVERSITY OF MINNESOTA · PI JARDINE, PAUL JAMES, MORAIS, MARC · 2017 to 2024
$4.1M
Structure, dynamics, and mechanism of genome packaging motors in dsDNA virusesR01AI182321 · NIAID · UNIVERSITY OF MINNESOTA · PI CARLOS Jose BUSTAMANTE, Paul James Jardine · 2025 to 2026
$1.5M
NIAID NIH HHS R01 AI182321NIGMS NIH HHS R01 GM122979
6 · The paper itself

Abstract

The self-assembly of bacteriophage capsids from major capsid proteins (MCPs) and scaffolding proteins (SPs) and the subsequent expansion of these capsids are essential steps in bacteriophage life cycles. However, the mechanism by which assembly occurs remains poorly understood, and few intermediate states are available to illuminate the expansion of meta-stable procapsids into robust mature capsids. Here, we present the structure of a partially expanded phi29 procapsid that reveals distinct conformations of MCPs and allows visualization of SPs in multiple oligomeric states. These results suggest that formation of SP dimers, tetramers, and higher-order oligomers drives dissociation of SP from MCP to actuate capsid expansion. Hexons expand first, and we propose penton maturation is delayed by a symmetry match with SP oligomers. We further show that the prolate shape of phi29's capsid is possible due to concave hexons in the equatorial region of the capsid that may alter interactions with SP and explain the observed dependence of the prolate shape on SP.

Indexed as

Bacillus PhagesCapsidCapsid ProteinsVirus AssemblyCryoelectron MicroscopyMicroscopy, Electron, TransmissionCapsid Proteins

Identifiers

PMID40106547
PMCPMC11922011

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.