Evidence map›Paper›PMID 40106482›Full record

ArticlePLoS computational biology2025

Eleven quick tips for writing a Bioconductor package.

Charlotte Soneson, Lori Shepherd, Marcel Ramos, Kevin Rue-Albrecht, Johannes Rainer, Hervé Pagès, Vincent J Carey

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Charlotte SonesonFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID https://orcid.org/0000-0003-3833-2169
Lori ShepherdDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, New York, United States of America.
Marcel RamosDepartment of Epidemiology and Biostatistics, City University of New York School of Public Health, New York, New York, United States of America.
Kevin Rue-AlbrechtMRC WIMM Centre for Computational Biology, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, United Kingdom.ORCID https://orcid.org/0000-0003-3899-3872
Johannes RainerInstitute for Biomedicine, Eurac Research, Bolzano, Italy.ORCID https://orcid.org/0000-0002-6977-7147
Hervé PagèsFred Hutch Cancer Center, Seattle, Washington, United States of America.
Vincent J CareyChanning Division of Network Medicine, Mass General Brigham, Harvard Medical School, Boston, Massachusetts, United States of America.

Funding

Supplement: Enhancing Community Contributions to Bioconductor With Build System Containerization and a GPU for TestingU24HG004059 · NHGRI · DANA-FARBER CANCER INST · PI VINCENT JAMES CAREY, Rafael Angel Irizarry · 2021 to 2026
$7.3M
NHGRI NIH HHS U24 HG004059
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID40106482
PMCPMC11922196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.