Evidence map›Paper›PMID 40102696›Full record

ArticleJournal of experimental botany2025

Genomic and evolutionary evidence for drought adaptation of allopolyploid Brachypodium hybridum.

Yuanyuan Wang, Guang Chen, Fanrong Zeng, Fenglin Deng, Zujun Yang, Zhigang Han, Shengchun Xu, Eviatar Nevo, Pilar Catalán, Zhong-Hua Chen

Abstract read
In one paragraph

Article in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Polyploidy: A macromutational force pushing bioeconomic developments.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Review
  4. Genomic Composition of the Artificial Hybrid ×Plants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yuanyuan WangCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.ORCID 0000-0001-9472-8606
Guang ChenXianghu Laboratory, Hangzhou 310021, China.ORCID 0000-0003-3906-9331
Fanrong ZengHubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 434025, China.ORCID 0000-0001-7742-5195
Fenglin DengHubei Collaborative Innovation Center for Grain Industry, College of Agriculture, Yangtze University, Jingzhou 434025, China.ORCID 0000-0002-2577-9001
Zujun YangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China.ORCID 0000-0003-4617-1422
Zhigang HanState Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin'an, Hangzhou, 311300, PR China.ORCID 0000-0001-8923-0723
Shengchun XuXianghu Laboratory, Hangzhou 310021, China.ORCID 0000-0001-8135-0990
Eviatar NevoInstitute of Evolution, University of Haifa, Mount Carmel, 34988384 Haifa, Israel.ORCID 0000-0002-4884-2499
Pilar CatalánDepartment of Agricultural and Environmental Sciences, High Polytechnic School of Huesca, University of Zaragoza, Huesca, Spain.ORCID 0000-0001-7793-5259
Zhong-Hua ChenSchool of Science, Western Sydney University, Penrith, NSW 2751, Australia.ORCID 0000-0002-7531-320X

Funding

Australian Research Council FT210100366National Natural Science Foundation of China 31571578National Natural Science Foundation of China 31571599National Natural Science Foundation of China 31620103912Spanish Ministry of Science and Innovation PID2022-140074NB-I00Spanish Ministry of Science and Innovation TED2021-131073B-I00
6 · The paper itself

Abstract

Climate change is increasing the frequency and severity of drought worldwide, threatening the environmental resilience of cultivated grasses. However, the genetic diversity in many wild grasses could contribute to the development of climate-adapted varieties. Here, we elucidated the impact of polyploidy on drought responses using allotetraploid Brachypodium hybridum (B. hybridum) and its progenitor diploid species Brachypodium stacei (B. stacei). Our findings suggest that progenitor species' genomic legacies resulting from hybridization and whole-genome duplications conferred greater ecological adaptive advantages to B. hybridum compared with B. stacei. Genes related to stomatal regulation and the immune response from S-subgenomes were under positive selection during speciation, underscoring their evolutionary importance in adapting to environmental stresses. Biased expression in polyploid subgenomes (B. stacei-type and B. distachyon-type) significantly influenced differential gene expression, with the dominant subgenome exhibiting more differential expression. B. hybridum adapted a drought escape strategy characterized by higher photosynthetic capacity and lower intrinsic water-use efficiency than B. stacei, driven by a highly correlated coexpression network involving genes in the circadian rhythm pathway. In summary, our study shows the influence of polyploidy on ecological and environmental adaptation and resilience in model Brachypodium grasses. These insights hold promise for informing the breeding of climate-resilient cereal crops and pasture grasses.

Indexed as

Adaptation, PhysiologicalBiological EvolutionBrachypodiumDroughtsGenome, PlantPolyploidyBrachypodium hybridumBrachypodium staceidrought response strategygenomicspolyploidystomatal regulationtranscriptomics

Identifiers

PMID40102696
PMCPMC12223499

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.