Evidence map›Paper›PMID 40102635›Full record

ReviewNature reviews. Drug discovery2025

Computational drug repurposing: approaches, evaluation of in silico resources and case studies.

Ziaurrehman Tanoli, Adrià Fernández-Torras, Umut Onur Özcan, Aleksandr Kushnir, Kristen Michelle Nader, Yojana Gadiya, Laura Fiorenza, Aleksandr Ianevski, Markus Vähä-Koskela, Mitro Miihkinen and 33 more

Abstract readReviewReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Drug discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Artificial Intelligence-Guided Phenotypic Drug Repurposing Against Streptococcus pneumoniae.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Ziaurrehman Tanoli *Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland. ziaurrehman.tanoli@helsinki.fi.ORCID 0000-0003-2435-9862
Adrià Fernández-Torras *Chemotargets SL, Parc Científic de Barcelona, Barcelona, Catalonia, Spain.
Umut Onur ÖzcanInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-7317-1682
Aleksandr KushnirInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.
Kristen Michelle NaderInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0009-0002-1068-0831
Yojana GadiyaFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Hamburg, Germany.ORCID 0000-0002-7683-0452
Laura FiorenzaDipartimento di Elettronica, Informazione e Bioingegneria (DEIB), Politecnico di Milano, Milan, Italy.
Aleksandr IanevskiInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-7780-482X
Markus Vähä-KoskelaInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0001-7764-7820
Mitro MiihkinenInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.ORCID 0000-0001-6822-3647
Umair SeemabSchool of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, Kuopio, Finland.
Henri LeinonenSchool of Pharmacy, Faculty of Health Sciences, University of Eastern Finland, Kuopio, Finland.ORCID 0000-0002-0388-832X
Brinton Seashore-LudlowScience for Life Laboratory (SciLifeLab), Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Marianna TampereScience for Life Laboratory (SciLifeLab), Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Adelinn KalmanScience for Life Laboratory (SciLifeLab), Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Flavio BallanteChemical Biology Consortium Sweden (CBCS), SciLifeLab, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-4831-3423
Emilio BenfenatiIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.
Gary SaundersEuropean Infrastructure for Translational Medicine (EATRIS ERIC), Amsterdam, The Netherlands.
Swapnil PotdarInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.
Ismael Gómez GarcíaChemotargets SL, Parc Científic de Barcelona, Barcelona, Catalonia, Spain.
Ricard García-SernaChemotargets SL, Parc Científic de Barcelona, Barcelona, Catalonia, Spain.
Carmine TalaricoEXSCALATE, Dompé farmaceutici S.p.A., Napoli, Italy.
Andrea Rosario BeccariEXSCALATE, Dompé farmaceutici S.p.A., Napoli, Italy.ORCID 0000-0001-6830-2695
Wesley SchaalDepartment of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Andrea PoloIstituto Nazionale Tumori - IRCCS - Fondazione G. Pascale, Napoli, Italy.
Susan CostantiniIstituto Nazionale Tumori - IRCCS - Fondazione G. Pascale, Napoli, Italy.
Enrico CabriIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.
Marc JacobsFraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Sankt Augustin, Germany.ORCID 0000-0003-4153-3930
Jani SaarelaInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland.
Alfredo BudillonIstituto Nazionale Tumori - IRCCS - Fondazione G. Pascale, Napoli, Italy.ORCID 0000-0002-6330-6053
Ola SpjuthDepartment of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-8083-2864
Päivi ÖstlingScience for Life Laboratory (SciLifeLab), Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden.
Henri XhaardDrug Discovery and Chemical Biology (DDCB) Consortium, Biocenter Finland, University of Helsinki, Helsinki, Finland.
Jordi QuintanaChemotargets SL, Parc Científic de Barcelona, Barcelona, Catalonia, Spain.
Jordi MestresChemotargets SL, Parc Científic de Barcelona, Barcelona, Catalonia, Spain.ORCID 0000-0002-5202-4501
Philip GribbonFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Hamburg, Germany.
Anton E UssiEuropean Infrastructure for Translational Medicine (EATRIS ERIC), Amsterdam, The Netherlands.
Donald C LoEuropean Infrastructure for Translational Medicine (EATRIS ERIC), Amsterdam, The Netherlands.
Martin de KortEuropean Infrastructure for Translational Medicine (EATRIS ERIC), Amsterdam, The Netherlands.ORCID 0000-0002-7264-5436
Krister WennerbergBiotech Research & Innovation Centre, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-1352-4220
Maddalena FratelliIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.ORCID 0000-0002-1769-3427
Jordi Carreras-PuigvertDepartment of Pharmaceutical Biosciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Tero AittokallioInstitute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki, Finland. tero.aittokallio@helsinki.fi.ORCID 0000-0002-0886-9769

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Repurposing of existing drugs for new indications has attracted substantial attention owing to its potential to accelerate drug development and reduce costs. Hundreds of computational resources such as databases and predictive platforms have been developed that can be applied for drug repurposing, making it challenging to select the right resource for a specific drug repurposing project. With the aim of helping to address this challenge, here we overview computational approaches to drug repurposing based on a comprehensive survey of available in silico resources using a purpose-built drug repurposing ontology that classifies the resources into hierarchical categories and provides application-specific information. We also present an expert evaluation of selected resources and three drug repurposing case studies implemented within the Horizon Europe REMEDi4ALL project to demonstrate the practical use of the resources. This comprehensive Review with expert evaluations and case studies provides guidelines and recommendations on the best use of various in silico resources for drug repurposing and establishes a basis for a sustainable and extendable drug repurposing web catalogue.

Indexed as

Computer SimulationDrug RepositioningModels, ChemicalHumansMolecular Docking SimulationPharmacogeneticsPhenotype

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.