Evidence map›Paper›PMID 40102453›Full record

ArticleScientific reports2025

RNA guanine content and G-quadruplex structure tune the phase behavior and material properties of biomolecular condensates.

Alfredo Vidal Ceballos, Anna Geissmann, Denize C Favaro, Priyasha Deshpande, Shana Elbaum-Garfinkle

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alfredo Vidal CeballosStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, NY, USA.
Anna GeissmannStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, NY, USA.
Denize C FavaroStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, NY, USA.
Priyasha DeshpandeStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, NY, USA.
Shana Elbaum-GarfinkleStructural Biology Initiative, Advanced Science Research Center, CUNY, New York, NY, USA. selbaumgarfinkle@gc.cuny.edu.

Funding

Architecture, dynamics and cell-specific behavior of tau condensatesR01AG082250 · NIA · ADVANCED SCIENCE RESEARCH CENTER · PI Shana Elbaum · 2023 to 2026
$1.6M
From Physiological Liquids to Pathological Gels: Regulation of Protein Phase Separation in Neurodegenerative DiseaseR00NS096217 · NINDS · ADVANCED SCIENCE RESEARCH CENTER · PI ELBAUM, SHANA · 2017 to 2019
$747k
NIA NIH HHS R01 AG082250NINDS NIH HHS R00 NS096217U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG082250-01
6 · The paper itself

Abstract

RNA binding proteins (RBPs) are enriched in phase separated biomolecular assemblies across cell types. These RBPs often harbor arginine-glycine rich RGG motifs, which can drive phase separation, and can preferentially interact with RNA G-quadruplex (G4) structures, particularly in the neuron. Increasing evidence underscores the important role that RNA sequence and structure play in contributing to the form and function of protein condensates, however, less is known about the role of G4 RNAs and their interaction with RGG domains specifically. In this study we focused on the model protein, Fragile X mental retardation protein (FMRP), to investigate how G4-containing RNA sequences impact the phase behavior and material properties of condensates. FMRP is implicated in the development of Fragile X Syndrome, and is enriched in neuronal granules where it is thought to aid in mRNA trafficking and translational control. Here, we examined RNA sequences with increasing G content and G4 propensity in complex with the RGG-containing low complexity region (LCR) of FMRP. We found, that while increasing G content triggers aggregation of poly-arginine, all RNA sequences supported phase separation into liquid droplets with FMRP-LCR. Combining microrheology, and fluorescence recovery after photobleaching, we measured a moderate increase in viscosity and decrease in dynamics for increasing G-content, and detected no measurable increase in elasticity as a function of G4 structure. Additionally, we found that while methylation of FMRP decreased RNA binding affinity, this modification did not impact condensate material properties suggesting that RNA sequence/structure can play a greater role than binding affinity in determining the emergent properties of condensates. Together, this work lends much needed insight into the ways in which G-rich RNA sequences tune the assembly, dynamics and material properties of protein/RNA condensates and/or granules.

Indexed as

Biomolecular CondensatesFragile X Messenger Ribonucleoprotein 1G-QuadruplexesGuanineRNAHumansRNA-Binding ProteinsFragile X Messenger Ribonucleoprotein 1GuanineRNARNA-Binding Proteins

Identifiers

PMID40102453
PMCPMC11920403

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.