Evidence map›Paper›PMID 40102399›Full record

ArticleNature communications2025

Genomic structural variation in an alpha/beta hydrolase triggers hybrid necrosis in wheat.

Yaoqi Si, Huaizhi Zhang, Shengwei Ma, Shusong Zheng, Jianqing Niu, Shuiquan Tian, Xuejia Cui, Keyu Zhu, Xiaocui Yan, Qiao Lu and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Harnessing primary, secondary and tertiary genepools for durable wheat disease resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Yaoqi Si *Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Huaizhi Zhang *Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Shengwei Ma *Yazhouwan National Laboratory, Sanya, Hainan Province, China.ORCID http://orcid.org/0000-0001-6196-811X
Shusong Zheng *Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Jianqing NiuYazhouwan National Laboratory, Sanya, Hainan Province, China.ORCID http://orcid.org/0000-0002-1449-4318
Shuiquan TianKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Xuejia CuiKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Keyu ZhuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-0351-7155
Xiaocui YanHebei Agricultural University, Baoding, Hebei Province, China.
Qiao LuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0003-4477-3304
Zhimeng ZhangKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Tingting DuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Ping LuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Yongxing ChenXianghu Laboratory, Hangzhou, Zhejiang, China.
Qiuhong WuXianghu Laboratory, Hangzhou, Zhejiang, China.
Jingzhong XieKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-5838-9632
Guanghao GuoKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Mengjun GuBiomedical Research Center for Structural Analysis, Shandong University, Jinan, Shandong, China.
Huilan WuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Yiwen LiKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0003-3895-1576
Chengguo YuanHebei Gaoyi Stock Seed Farm, Gaoyi, Hebei, China.
Zaifeng LiHebei Agricultural University, Baoding, Hebei Province, China.
Zhiyong LiuKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. zyliu@genetics.ac.cn.ORCID http://orcid.org/0000-0002-6958-5233
Lingli DongKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. lldong@genetics.ac.cn.ORCID http://orcid.org/0000-0003-1990-9559
Hong-Qing LingKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. hqling@genetics.ac.cn.ORCID http://orcid.org/0000-0001-9988-2282
Miaomiao LiKey Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. mmli@genetics.ac.cn.ORCID http://orcid.org/0000-0001-9691-0233

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hybrid necrosis, a century-old mystery in wheat, is caused by complementary genes Ne1 and Ne2. Ne2, encoding a nucleotide-binding leucine-rich repeat (NLR) immune receptor, has been cloned, yet Ne1 remains elusive. Here, we report that Ne1, which encodes an alpha/beta hydrolase (ABH) protein generated by structural variation, triggers hybrid necrosis with Ne2 by activating autoimmune responses. We further verify that not only allelic variation but also copy number variation (CNV) of Ne1 are pivotal for hybrid necrosis diversity in wheat. Ne1 likely originates from wild emmer wheat, potentially through duplication and ectopic recombination events. Unlike Ne2, which is frequently selected for rust resistance in wheat breeding, the lower prevalence of Ne1 in modern wheat cultivars is attributed to its association with hybrid necrosis. Altogether, these findings illuminate the co-evolution of the NLR/ABH gene pair in plant development and innate immunity, offering potential benefits for wheat breeding.

Indexed as

Genomic Structural VariationHydrolasesPlant DiseasesPlant ProteinsTriticumAllelesDisease ResistanceDNA Copy Number VariationsGene Expression Regulation, PlantNecrosisNLR ProteinsHydrolasesNLR ProteinsPlant Proteins

Identifiers

PMID40102399
PMCPMC11920055

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.