Evidence map›Paper›PMID 40100955›Full record

ArticleEnvironmental science & technology2025

Evaluating Quantitative Metagenomics for Environmental Monitoring of Antibiotic Resistance and Establishing Detection Limits.

Benjamin C Davis, Peter J Vikesland, Amy Pruden

Abstract read
In one paragraph

Article in Environmental science & technology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Quantitative metagenomics using a portable protocol.Applied and environmental microbiology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Benjamin C DavisOffice of Research and Development, U.S. Environmental Protection Agency, Cincinnati, Ohio 45268, United States.ORCID 0000-0002-8752-6608
Peter J VikeslandDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0003-2654-5132
Amy PrudenDepartment of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0002-3191-6244

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metagenomics holds promise as a comprehensive, nontargeted tool for environmental monitoring. However, one key limitation is that the quantitative capacity of metagenomics is not well-defined. Here, we demonstrated a quantitative metagenomic technique and benchmarked the approach for wastewater-based surveillance of antibiotic resistance genes. To assess the variability of low-abundance oligonucleotide detection across sample matrices, we spiked DNA reference standards (meta sequins) into replicate wastewater DNA extracts at logarithmically decreasing mass-to-mass percentages (m/m%). Meta sequin ladders exhibited strong linearity at input concentrations as low as 2 × 10

Indexed as

Drug Resistance, MicrobialEnvironmental MonitoringMetagenomicsSewageWastewaterSewageWastewaterantibiotic resistanceenvironmental monitoringinternal standardslimit of detectionlimit of quantificationquantitative metagenomics

Identifiers

PMID40100955
PMCPMC11966778

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.