Evidence map›Paper›PMID 40100800›Full record

ArticlePLoS neglected tropical diseases2025

Establishment of an RPA-CRISPR/Cas12a combined diagnostic system for Pneumocystis jirovecii pneumonia.

Yun Wu, Yuhan Shao, Wei Li, Ying Yu, Xia Rao, Jingyi Li, Nicholas R Waterfield, Guowei Yang

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Multiplex on-chip detection ofFrontiers in bioengineering and biotechnology · 2026
    Article
  3. Advances in pathogen detection ofInfectious medicine · 2025
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yun WuBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Yuhan ShaoBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Wei LiBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Ying YuBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Xia RaoBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Jingyi LiBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.
Nicholas R WaterfieldWarwick Medical School, Warwick University, Coventry, United Kingdom.
Guowei YangBeijing Institute of Tropical Medicine, Beijing Friendship Hospital, Capital Medical University, Beijing, China.ORCID 0000-0002-3090-6677

Funding

National Natural Science Foundation of China
6 · The paper itself

Abstract

Pneumocystis jirovecii causes severe pneumonia in immunocompromised individuals, leading to high mortality and an economic burden. There is a need for early detection methods suitable for low-resource settings and rapid point-of-care diagnostics. This study developed a detection method using Recombinase Polymerase Amplification (RPA) followed by CRISPR/Cas12a with fluorescence detection. The RPA primers and CRISPR-derived RNAs (crRNAs) were specifically designed to target the mitochondrial small subunit rRNA (mtSSU rRNA) gene of P. jirovecii. A total of 83 clinical samples were tested using this method, including 39 confirmed and 44 suspected cases of P. jirovecii infection. The combination of crRNA5 and crRNA6 demonstrated higher sensitivity compared to the current real-time PCR detection method, with a limit of detection (LOD) of 1 copy per reaction and showed no cross-reactions with other respiratory pathogens. The concordance of this method was validated with both infected and non-infected patients. In conclusion, the method developed in this study potentially provides a highly sensitive and rapid tool suitable for the early and on-site detection of P. jirovecii pneumonia. Furthermore, this method holds potential applications for the detection of other human pathogens, representing a significant advancement in diagnostic capabilities for low-resource settings.

Indexed as

CRISPR-Cas SystemsMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesPneumocystis cariniiPneumonia, PneumocystisBacterial ProteinsCRISPR-Associated ProteinsEndodeoxyribonucleasesHumansRecombinasesSensitivity and SpecificityBacterial ProteinsCas12a proteinCRISPR-Associated ProteinsEndodeoxyribonucleasesRecombinases

Identifiers

PMID40100800
PMCPMC11918415

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.