Evidence map›Paper›PMID 40100062›Full record

ArticleThe Journal of cell biology2025

A collagen IV fluorophore knock-in toolkit reveals trimer diversity in C. elegans basement membranes.

Sandhya Srinivasan, William Ramos-Lewis, Mychel R P T Morais, Qiuyi Chi, Adam W J Soh, Emily Williams, Rachel Lennon, David R Sherwood

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. WormTagDB: A Systematic Survey of Endogenously Tagged Proteins inbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. The life cycle of type IV collagen.Matrix biology : journal of the International Society for Matrix Biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sandhya Srinivasan *Department of Biology, Duke University, Durham, NC, USA.ORCID 0000-0002-0455-6239
William Ramos-Lewis *Department of Biology, Duke University, Durham, NC, USA.ORCID 0000-0002-4627-4571
Mychel R P T MoraisDivision of Cell-Matrix Biology and Regenerative Medicine, Wellcome Centre for Cell-Matrix Research, School of Biological Sciences, Faculty of Biology Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.ORCID 0000-0001-5237-9524
Qiuyi ChiDepartment of Biology, Duke University, Durham, NC, USA.ORCID 0000-0003-1297-4163
Adam W J SohDepartment of Biology, Duke University, Durham, NC, USA.ORCID 0000-0003-3931-1765
Emily WilliamsDivision of Cell-Matrix Biology and Regenerative Medicine, Wellcome Centre for Cell-Matrix Research, School of Biological Sciences, Faculty of Biology Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.ORCID 0000-0003-3913-5095
Rachel LennonDivision of Cell-Matrix Biology and Regenerative Medicine, Wellcome Centre for Cell-Matrix Research, School of Biological Sciences, Faculty of Biology Medicine and Health, Manchester Academic Health Science Centre, The University of Manchester, Manchester, UK.ORCID 0000-0001-6400-0227
David R SherwoodDepartment of Biology, Duke University, Durham, NC, USA.ORCID 0000-0002-4448-6917

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Understanding how cells invade through basement membrane in vivoR35GM118049 · NIGMS · DUKE UNIVERSITY · PI David R Sherwood · 2016 to 2026
$6.8M
A Comprehensive Endogenous Basement Membrane Toolkit to Elucidate how Basement Membranes Stretch on Mechanically Active Tissues and Decline during AgingR21OD032430 · OD · DUKE UNIVERSITY · PI SHERWOOD, DAVID R · 2022 to 2023
$427k
Understanding the Mechanisms and Consequences of Basement Membrane Aging in VivoF32AG077907 · NIA · DUKE UNIVERSITY · PI RAMOS-LEWIS, WILLIAM DAVID · 2022 to 2025
$225k
Jane Coffin Childs Memorial FundKidney Research UKNational Institute for Health ResearchNIA NIH HHS F32 AG077907NIGMS NIH HHS R35 GM118049NIH HHS P40 OD010440NIH HHS R21 OD032430Stoneygate TrustWellcome TrustWellcome Trust 227417/Z/23/Z
6 · The paper itself

Abstract

The type IV collagen triple helix, composed of three ⍺-chains, is a core basement membrane (BM) component that assembles into a network within BMs. Endogenous tagging of all ⍺-chains with genetically encoded fluorophores has remained elusive, limiting our understanding of this crucial BM component. Through genome editing, we show that the C termini of the C. elegans type IV collagen ⍺-chains EMB-9 and LET-2 can be fused to a variety of fluorophores to create a strain toolkit with wild-type health. Using quantitative imaging, our results suggest a preference for LET-2-LET-2-EMB-9 trimer construction, but also tissue-specific flexibility in trimers assembled driven by differences in ⍺-chain expression levels. By tagging emb-9 and let-2 mutants that model human Gould syndrome, a complex multitissue disorder, we further discover defects in extracellular accumulation and turnover that might help explain disease pathology. Together, our findings identify a permissive tagging site in C. elegans that will allow diverse studies on type IV collagen regulation and function in animals.

Indexed as

Basement MembraneCaenorhabditis elegansCaenorhabditis elegans ProteinsCollagen Type IVFluorescent DyesAnimalsGene Knock-In TechniquesHumansMutationProtein MultimerizationCaenorhabditis elegans ProteinsCollagen Type IVFluorescent Dyes

Identifiers

PMID40100062
PMCPMC11917169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.