Evidence map›Paper›PMID 40099881›Full record

ArticlemBio2025

Metagenomic and transcriptomic investigation of pediatric acute liver failure cases reveals a common pathway predominated by monocytes.

Ruben H de Kleine, Ellen C Carbo, Willem S Lexmond, Xuewei W Zhou, Alicia de Kroon, Hailiang Mei, Sander T H Bontemps, Rick Hennevelt, Lilli Gard, Igor A Sidorov and 9 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Ruben H de Kleine *Department of Surgery, Section of Hepatobiliary Surgery and Liver Transplantation, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.ORCID 0000-0003-3975-3184
Ellen C Carbo *Leiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.
Willem S LexmondDepartment of Pediatrics, Section of Paediatric Gastroenterology and Hepatology, Beatrix Children's Hospital, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Xuewei W ZhouDepartment of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, Groningen, The Netherlands.
Alicia de KroonLeiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.
Hailiang MeiSequencing Analysis Support Core, Department of Biomedical Data Sciences, Leiden University Medical Center, Leiden, The Netherlands.
Sander T H BontempsDepartment of Pediatric Intensive Care, Beatrix Children's Hospital, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Rick HenneveltGenomeScan B.V., Leiden, The Netherlands.
Lilli GardDepartment of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, Groningen, The Netherlands.
Igor A SidorovLeiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.
Stefan A BoersLeiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0002-1560-6799
Marius C van den HeuvelDepartment of Pathology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Emilie P BuddinghWillem-Alexander Children's Hospital, Department of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.
Aloys C M KroesLeiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.
Vincent E de MeijerDepartment of Surgery, Section of Hepatobiliary Surgery and Liver Transplantation, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Elisabeth H SchölvinckDepartment of Pediatrics, Section Infectious Diseases and Immunology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Karin J von EijeDepartment of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, Groningen, The Netherlands.
Simon P Jochems *Leiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0002-4835-1032
Jutte J C de Vries *Leiden University Center for Infectious Diseases (LUCID), Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0003-2530-6260

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In 2022, a cluster of severe childhood hepatitis was detected primarily in Europe and North America, leading to a global alert by the World Health Organization. An association with adeno-associated virus 2 (AAV2) in conjunction with human adenoviruses was found. Five percent of the cases progressed to acute liver failure, necessitating transplantation. The mechanism of disease that accounts for fulminant liver failure in these patients remains incompletely described. An upsurge was observed of in the five total cases of acute liver failure that presented to the Dutch national referral center for pediatric liver transplantation in the spring of 2022. An in-depth molecular analysis of the mechanism of pediatric acute liver failure was performed using targeted transcriptomics and metagenomics to identify any virus present in the cases, immune profile haplotypes, and differentially expressed gene groups. Explanted liver tissue and plasma samples ( IMPORTANCE: Since the appearance of the cluster of pediatric hepatitis of unknown origin in 2022, several groups have reported an association of adenoviruses and AAV2 in a high number of cases in contrast to controls. The adenoviruses detected were heterogeneous in both species-adenovirus C and F-and sequences. The mechanisms of disease that accounts for fulminant liver failure, occurring in 5% of pediatric hepatitis cases, remain incompletely described. The current study adds to previous data by including pediatric acute liver failure cases during the upsurge, enabling the analyses of inflammation expression profiles in cases with different viruses in relation to pediatric controls. This led to the discovery of transcriptome upregulation of monocyte pathways in liver explants from the cases. This inflammatory transcriptomic signature was comparable for AAV2, adenoviruses, and/or herpesviruses-positive transplant cases.

Indexed as

Liver Failure, AcuteMetagenomicsMonocytesTranscriptomeAdolescentChildChild, PreschoolDependovirusFemaleGene Expression ProfilingHumansInfantLiverLiver TransplantationMaleadeno-associated viruschildhood hepatitismetagenomicstranscriptomics

Identifiers

PMID40099881
PMCPMC11980388

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.