Evidence map›Paper›PMID 40097969›Full record

ArticleBMC genomics2025

Enhanced dynamicity: evolutionary insights into amphibian mitogenomes architecture.

Yi Xiao, Gengyun Niu, Haihe Shi, Zhenyu Wang, Renzeng Du, Yankuo Li, Meicai Wei

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yi XiaoLaboratory of Insect Systematics and Evolutionary Biology, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China.
Gengyun NiuLaboratory of Insect Systematics and Evolutionary Biology, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China. niug@jxnu.edu.cn.
Haihe ShiSchool of Computer and Information Engineering, Jiangxi Normal University, Nanchang, 330022, China.
Zhenyu WangNanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China.
Renzeng DuSchool of Digital Industry, Jiangxi Normal University, Nanchang, 330022, China.
Yankuo LiNanchang Key Laboratory of Microbial Resources Exploitation & Utilization from Poyang Lake Wetland, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China.
Meicai WeiLaboratory of Insect Systematics and Evolutionary Biology, College of Life Sciences, Jiangxi Normal University, Nanchang, 330022, China. weim@jxnu.edu.cn.

Funding

National Natural Science Foundation of China 31970447National Natural Science Foundation of China 32370500
6 · The paper itself

Abstract

Mitogenomes are known for their structural dynamics and the complexity of their rearrangement patterns. However, their utility in metazoan comparative biology has not been fully exploited. Vertebrate mitogenomes are now sufficiently representative to allow the development of more advanced methods for comparing genome architecture. Furthermore, the relatively robust phylogeny of vertebrates at higher taxonomic ranks allows us to infer the patterns of genome evolution accordingly. In this study, using amphibians as an example, we performed data cleaning and manual annotation on 1777 samples from the NCBI and identified 88 rearrangement types, most of which were clade-specific. In addition, we quantified genomic changes in an evolutionary framework and obtained stepwise growth curves of the architectural changes. This study provides new perspectives for understanding the evolution of the mitogenomes in amphibians and is expected to facilitate the qualitative and quantitative development of mitogenomes research.

Indexed as

AmphibiansEvolution, MolecularGenome, MitochondrialAnimalsGene RearrangementGenomicsPhylogenyComparative genomicsComplexityEvolutionary transitionsGene rearrangementMacroevolutionMitogenome

Identifiers

PMID40097969
PMCPMC11917051

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.