Evidence map›Paper›PMID 40097595›Full record

ArticleHeredity2025

Sperm DNA methylation landscape and its links to male fertility in a non-model teleost using EM-seq.

Fotis Pappas, Martin Johnsson, Göran Andersson, Paul V Debes, Christos Palaiokostas

Abstract read
In one paragraph

Article in Heredity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Fotis PappasDepartment of Animal Biosciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0003-3696-5069
Martin JohnssonDepartment of Animal Biosciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0003-1262-4585
Göran AnderssonDepartment of Animal Biosciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.ORCID 0000-0001-5131-3144
Paul V DebesDepartment of Aquaculture and Fish Biology, Hólar University, Sauðárkrókur, Iceland.ORCID 0000-0003-4491-9564
Christos PalaiokostasDepartment of Animal Biosciences, Swedish University of Agricultural Sciences, Uppsala, Sweden. christos.palaiokostas@slu.se.ORCID 0000-0002-4480-4612

Funding

Svenska Forskningsrådet Formas (Swedish Research Council Formas) 2022-00348
6 · The paper itself

Abstract

Differential DNA methylation due to epigenetic phenomena is crucial in regulating gene expression. Understanding the consequences of such differential expression on sperm quality parameters may provide insights into the underlying mechanisms of male reproductive success. Nonetheless, male fertility in fish remains understudied despite its critical importance to overall reproductive success in nature and captivity. This study investigated the DNA methylation landscape in spermatozoa of domesticated Arctic charr (Salvelinus alpinus) and its associations with sperm quality parameters. Computer assisted-semen analysis (CASA) was performed in 47 sperm samples of farmed Arctic charr, followed by enzymatic methylation sequencing (EM-seq). Our results showed that the DNA of Arctic charr sperm is highly methylated (mean value of ~86%), though variations were observed in genomic features involved in gene regulation. Methylation at variable CpG sites exhibited regional correlation decaying by physical distance, while methylation similarities among individuals were strongly coupled with genetic variation and mirrored pedigree structure. Comethylation network analyses for promoters, CpG islands and first introns revealed genomic modules significantly correlated with sperm quality traits (p < 0.05; Bonferroni adjusted), with distinct patterns suggesting a resource trade-off between sperm concentration and kinematics. Furthermore, annotation and gene-set enrichment analysis highlighted biological mechanisms related to spermatogenesis, cytoskeletal regulation, and mitochondrial function, all vital to sperm physiology. These findings suggest that DNA methylation is a critical and fundamental factor influencing male fertility in Arctic charr, providing insights into the underlying mechanisms of male reproductive success.

Indexed as

DNA MethylationFertilitySpermatozoaTroutAnimalsCpG IslandsEpigenesis, GeneticMaleSemen Analysis

Identifiers

PMID40097595
PMCPMC12056074

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.