Evidence map›Paper›PMID 40097570›Full record

ArticleScientific reports2025

A novel gene linked to Imipenem resistance in E. coli isolate lacking known Imipenem-resistance genes.

Trang Thu Hoang, Huyen Thanh Thi Le, Sang Ngoc Nguyen, Ung Dinh Nguyen, Tuan Ngoc Tran, Cuong Hung Nguyen, Thang Quang Truong, Nam S Vo, Duc Quang Le, Son Hoang Nguyen and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Trang Thu Hoang *Department of Genomics, Institute of Biomedicine & Pharmacy, Military Medical University, Hanoi, Vietnam.
Huyen Thanh Thi Le *Vinh Medical University, Nghean, Vietnam.
Sang Ngoc NguyenPediatric Department, Haiphong University of Medicine and Pharmacy, Haiphong, Vietnam.
Ung Dinh NguyenDepartment of Genomics, Institute of Biomedicine & Pharmacy, Military Medical University, Hanoi, Vietnam.
Tuan Ngoc TranVietnam Military Medical University, Hanoi, Vietnam.
Cuong Hung NguyenDepartment of Microbiology, Vietnam Military Medical University, Hanoi, Vietnam.
Thang Quang TruongMilitary Hospital 4, Nghean, Vietnam.
Nam S VoCenter for Biomedical Informatics, Vingroup Big Data Institute, Hanoi, Vietnam.
Duc Quang LeFaculty of IT, National University of Civil Engineering, Hanoi, Vietnam.
Son Hoang NguyenAmromics JSC, Nghean, Vietnam.
Minh Duc CaoAmromics JSC, Nghean, Vietnam.
Thi Minh Ngoc DaoDepartment of Genomics, Institute of Biomedicine & Pharmacy, Military Medical University, Hanoi, Vietnam.
Thi Huyen BuiInstitute of Biotechnology (IBT), Vietnam Academy of Science and Technology (VAST), 18, Hoang Quoc Viet Road, Cau Giay, Hanoi, Vietnam.
Thu An NguyenInstitute of Biotechnology (IBT), Vietnam Academy of Science and Technology (VAST), 18, Hoang Quoc Viet Road, Cau Giay, Hanoi, Vietnam.
Thi Lan Anh PhamInstitute of Biotechnology (IBT), Vietnam Academy of Science and Technology (VAST), 18, Hoang Quoc Viet Road, Cau Giay, Hanoi, Vietnam.
Thi Bich Thao LeInstitute of Biotechnology (IBT), Vietnam Academy of Science and Technology (VAST), 18, Hoang Quoc Viet Road, Cau Giay, Hanoi, Vietnam.
Tho Huu HoDepartment of Genomics, Institute of Biomedicine & Pharmacy, Military Medical University, Hanoi, Vietnam. hohuutho@vmmu.edu.vn.ORCID http://orcid.org/0000-0002-8363-1427

Funding

Vingroup Innovation Foundation (VINIF) VINIF.2019.DA11
6 · The paper itself

Abstract

Imipenem-resistant Escherichia coli strains represent a growing public health concern, posing a threat due to their resistance to last-resort antibiotics. Here, we present the discovery of the Imipenem-Linked Resistance Gene VIN (ILR-VIN) within E. coli isolates from Vietnam, revealing its absence in non-resistant E. coli and local bacterial species. ILR-VIN constitutes a previously unrecognized genetic element potentially linked to Imipenem resistance, with notable prevalence in Vietnamese E. coli strains.We conducted an in-depth examination of the genetic basis of Carbapenem resistance in E. coli strains causing urinary tract infections. In a set of 47 UTI strains, we identified five displaying Imipenem resistance, with four of them carrying known resistance genes. Interestingly, ECV219, despite exhibiting Imipenem resistance, lacked known resistance genes, suggesting an unreported resistance mechanism. Comparative genetic analysis revealed distinct genes in ECV219, indicating a novel Imipenem resistance gene. To assess its function, we conducted transformation experiments in E. coli Rosetta™(DE3)pLysS and performed bioinformatics analyses using BLASTp, InterProScan, and Pfam to characterize the gene's structure and potential functions.Our study identifies ILR-VIN as a novel gene linked to Imipenem resistance in E. coli isolate lacking known Imipenem-resistance genes. Experimental evidence confirmed that ILR-VIN expression enhances bacterial survival under Imipenem stress, providing direct evidence of its role in resistance. This discovery highlights the importance of ongoing research into antibiotic resistance genes to develop effective treatment strategies against antibiotic-resistant bacterial infections.

Indexed as

Anti-Bacterial AgentsDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsGenes, BacterialImipenemEscherichia coli InfectionsHumansMicrobial Sensitivity TestsUrinary Tract InfectionsVietnamAnti-Bacterial AgentsEscherichia coli ProteinsImipenemAntibiotic resistance geneE. coliImipenem resistanceVietnamese bacteria

Identifiers

PMID40097570
PMCPMC11914613

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.