Evidence map›Paper›PMID 40097557›Full record

ArticleCommunications biology2025

Light cues drive community-wide transcriptional shifts in the hypersaline South Bay Salt Works.

Margaret M Weng, Benjamin Klempay, Jeff S Bowman, Luke Fisher, Cyprien Camplong, Peter T Doran, Susan Rundell, Jennifer B Glass, Avishek Dutta, Alexandra Pontefract and 3 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Margaret M WengGeorgetown University, Washington, DC, USA. mw1144@georgetown.edu.ORCID http://orcid.org/0000-0002-1311-0829
Benjamin KlempayScripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3531-829X
Jeff S BowmanScripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8811-6280
Luke FisherScripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA.
Cyprien CamplongUniversité de Bretagne Occidentale (UBO), Brest, France.
Peter T DoranLouisiana State University, Baton Rouge, LA, USA.
Susan RundellUniversity of Washington, Seattle, WA, USA.
Jennifer B GlassGeorgia Institute of Technology, Atlanta, GA, USA.ORCID http://orcid.org/0000-0003-0775-2486
Avishek DuttaScripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-4341-3548
Alexandra PontefractJohns Hopkins University, Baltimore, MD, USA.
Douglas H BartlettScripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA.
Britney SchmidtCornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0001-7376-8510
Sarah Stewart JohnsonGeorgetown University, Washington, DC, USA.ORCID http://orcid.org/0000-0002-8342-7688

Funding

Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
National Aeronautics and Space Administration (NASA) #80NSSC18K1301National Science Foundation (NSF) Graduate Research Fellowship ProgramNIH HHS S10 OD026929
6 · The paper itself

Abstract

The transition from day to night brings sweeping change to both environments and the organisms within them. Diel shifts in gene expression have been documented across all domains of life but remain understudied in microbial communities, particularly those in extreme environments where small changes may have rippling effects on resource availability. In hypersaline environments, many prominent taxa are photoheterotrophs that rely on organic carbon for growth but can also generate significant ATP via light-powered rhodopsins. Previous research demonstrated a significant response to light intensity shifts in the model halophile Halobacterium salinarum, but these cycles have rarely been explored in situ. Here, we examined genome-resolved differential expression in a hypersaline saltern (water activity (a

Indexed as

BaysHalobacterium salinarumLightMicrobiotaSalinityTranscription, GeneticGene Expression Regulation, Bacterial

Identifiers

PMID40097557
PMCPMC11914471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.