Evidence map›Paper›PMID 40096956›Full record

ArticleDevelopmental biology2025

A gene regulatory network for specification and morphogenesis of a Mauthner Cell homolog in non-vertebrate chordates.

Kwantae Kim, Katarzyna M Piekarz, Alberto Stolfi

Abstract read
In one paragraph

Article in Developmental biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Similarities betweeneNeuro · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kwantae KimSchool of Biological Sciences, Georgia Institute of Technology, USA.
Katarzyna M PiekarzSchool of Biological Sciences, Georgia Institute of Technology, USA.
Alberto StolfiSchool of Biological Sciences, Georgia Institute of Technology, USA. Electronic address: alberto.stolfi@biosci.gatech.edu.

Funding

Regulation of neurodevelopmental cell behaviors in CionaR01HD104825 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI Christina Donata Cota, Alberto Stolfi · 2022 to 2026
$1.6M
Tissue-specific regulation of cellular morphogenesis during embryonic development of the invertebrate chordate Ciona intestinalisR00HD084814 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI STOLFI, ALBERTO · 2017 to 2019
$592k
Tissue-specific regulation of cellular morphogenesis during embryonic development of the invertebrate chordate Ciona intestinalisK99HD084814 · NICHD · NEW YORK UNIVERSITY · PI STOLFI, ALBERTO · 2016 to 2017
$188k
NICHD NIH HHS K99 HD084814NICHD NIH HHS R00 HD084814NICHD NIH HHS R01 HD104825
6 · The paper itself

Abstract

Transcriptional regulation of gene expression is an indispensable process in multicellular development, yet we still do not fully understand how the complex networks of transcription factors operating in neuronal precursors coordinately control the expression of effector genes that shape morphogenesis and terminal differentiation. Here we break down in greater detail a provisional regulatory circuit downstream of the transcription factor Pax3/7 operating in the descending decussating neurons (ddNs) of the tunicate Ciona robusta. The ddNs are a pair of hindbrain neurons proposed to be homologous to the Mauthner cells of anamniotes, and Pax3/7 is sufficient and necessary for their specification. We show that different transcription factors downstream of Pax3/7, namely Pou4, Lhx1/5, and Dmbx, regulate distinct "branches" of this ddN network that appear to be dedicated to different developmental tasks. Some of these network branches are shared with other neurons throughout the larva, reinforcing the idea that modularity is likely a key feature of such networks. We discuss these ideas and their evolutionary implications here, including the observation that homologs of all four transcription factors (Pax3/7, Lhx5, Pou4f3, and Dmbx1) are key for the specification of cranial neural crest in vertebrates.

Indexed as

CionaCiona intestinalisGene Expression Regulation, DevelopmentalGene Regulatory NetworksMorphogenesisNeuronsAnimalsPaired Box Transcription FactorsPAX3 Transcription FactorRhombencephalonTranscription FactorsPaired Box Transcription FactorsPAX3 Transcription FactorTranscription FactorsCionaddNsLhx1/5Mauthner cellPax3/7Pou4Tunicates

Identifiers

PMID40096956
PMCPMC11994291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.