Evidence map›Paper›PMID 40096063›Full record

ArticlePLoS pathogens2025

A genomic and phenotypic investigation of pigeon-adaptive Salmonella.

Zining Wang, Zenghai Jiang, Qianzhe Cao, Chenghao Jia, Haiyang Zhou, Chenghu Huang, Linlin Huang, Yingying Huang, Yan Li, Min Yue

Abstract read
In one paragraph

Article in PLoS pathogens, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Host adaptation inApplied and environmental microbiology · 2026
    Review
  3. Genomic epidemiology ofFrontiers in microbiology · 2026
    Article
  4. Article
  5. Article
  6. eLife · 2025
    Article
  7. Article
  8. Integrative transcriptome-based drug repurposing in tuberculosis.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zining WangKey Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, China.
Zenghai JiangCollege of Veterinary Medicine, Henan University of Animal Husbandry and Economy, Zhengzhou, China.
Qianzhe CaoDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Chenghao JiaDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Haiyang ZhouDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Chenghu HuangDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Linlin HuangDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Yingying HuangDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Yan LiDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, China.
Min YueKey Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, China.ORCID 0000-0002-6787-0794

Funding

European Union's Horizon 2020 Research and Innovation ProgrammeHainan Provincial Joint Project of Sanya Yazhou Bay Science and Technology CityNational Program on Key Research Project of ChinaZhejiang Provincial Key R&D Program of ChinaZhejiang Provincial Natural Science Foundation of China
6 · The paper itself

Abstract

Salmonella, a significant threat to public safety, inflicts substantial economic losses on the poultry industry. The unique "parental feeding" breeding model of pigeon farms, against the "all-in & all-out" biosecurity strategy, makes them susceptible to Salmonella infections and subsequent outbreaks of pigeon paratyphoid. This study initially studied three pigeon paratyphoid outbreak incidents in Henan, China, in which 53 strains of pigeon-origin Salmonella Typhimurium (STM) were identified. Whole-genome sequencing (WGS) and antimicrobial-resistant profile analysis revealed that the three outbreaks were caused by distinct STM clones (ST128-DT2, ST19-DT99). Global phylogenetic analysis suggested that the United States is a possible origin, indicating a risk of intercontinental transmission via pigeon eggs. Further bacterial virulence and invasion assays, including in vitro and in vivo assays, revealed that pigeon-host-adaptive STM, compared to broad-host-range STM, carried fewer resistance genes, exhibited higher invasion indices and pseudogene levels, displayed a non-rdar (red dry and rough) phenotype, and had strong biofilm formation capability. Additionally, they showed reduced virulence and invasiveness in mice but a pigeon-adaptive feature in cogent models. The collective results support the host adaptation for pigeons among DT2 and DT99 phage-type isolates.

Indexed as

ColumbidaeSalmonella Infections, AnimalSalmonella typhimuriumAnimalsChinaDisease OutbreaksGenome, BacterialGenomicsMicePhenotypePhylogenyVirulenceWhole Genome Sequencing

Identifiers

PMID40096063
PMCPMC11957392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.