Evidence map›Paper›PMID 40094390›Full record

ArticleThe Journal of infectious diseases2025

Identification of Coccidioidomycosis Immunoreactive Peptides That Recall T-Cell Responses Indicating Past Exposure.

Mrinalini Kala, Mame Diarra Bousso Ndiaye, Erin Kelley, Maxx Harvey, Farhan Babur, Garrett Grischo, Jessica S Marshall, Jinhee Yi, Anna L Engelbrektson, John A Altin and 4 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Exhausted T cell phenotypes in disseminated coccidioidomycosis.medRxiv : the preprint server for health sciences · 2026
    Article
  5. Review
  6. Type-2 immune skewing in patients with disseminated coccidioidomycosis.medRxiv : the preprint server for health sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mrinalini KalaDepartment of Internal Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, Arizona, USA.
Mame Diarra Bousso NdiayePathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.ORCID 0000-0003-2214-9845
Erin KelleyTranslational Genomics Research Institute, Flagstaff, Arizona, USA.ORCID 0000-0002-4164-0771
Maxx HarveyPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.
Farhan BaburDepartment of Internal Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, Arizona, USA.ORCID 0009-0005-2756-6121
Garrett GrischoDepartment of Internal Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, Arizona, USA.
Jessica S MarshallPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.
Jinhee YiPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.
Anna L EngelbrektsonTranslational Genomics Research Institute, Flagstaff, Arizona, USA.ORCID 0000-0002-7923-9449
John A AltinTranslational Genomics Research Institute, Flagstaff, Arizona, USA.
Bridget M BarkerPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.ORCID 0000-0002-3439-4517
Paul KeimPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.ORCID 0000-0003-0089-5820
Kenneth S KnoxDepartment of Internal Medicine, University of Arizona College of Medicine-Phoenix, Phoenix, Arizona, USA.
Erik W SettlesPathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, USA.ORCID 0000-0003-4331-3683

Funding

Early in vivo Expressed Antigens and their Role in Virulence, Immune Response, and Vaccines for CoccidioidomycosisU19AI166058 · NIAID · NORTHERN ARIZONA UNIVERSITY · PI Deborah H. Fuller · 2022 to 2026
$12.1M
Arizona Biomedical Research Commission ADHS18-198851NIAID NIH HHS U19 AI166058NIH HHS U19 U19AI166058Northern Arizona Universitythe University of Arizona
6 · The paper itself

Abstract

backgroundValley fever (VF) is a common cause of community-acquired pneumonia in the American Southwest. Diagnosis is challenging due to VF's similarities to other pulmonary diseases. The VF T-cell response is important to control the disease, and measuring this response holds promise as an improved diagnostic. We aim to identify of VF T-cell epitopes, and to develop disease and efficacy diagnostics for the clinic and vaccine trials.

methodsWe identified VF-specific T-cell epitopes by using their ability to bind the major histocompatibility complex (MHC) class II molecules and T-cell stimulation. We performed MHC binding prediction on known and unknown Coccidioides antigens and then empirically tested the predictions on unknown antigens with an in vitro multiplex MHC binding analysis. Peripheral blood mononuclear cells from patients with clinical Coccidioides infections and from endemic or nonendemic healthy controls were stimulated with the identified peptides and evaluated for immunologic memory responses.

resultsA total of 108 Coccidioides peptides were identified by MHC class II binding. The 108 peptides (NAU108) were synthesized, pooled, and jointly evaluated for immunogenicity in VF-positive individuals. The peptides reactivated memory CD4+ T cells in VF-confirmed and endemic VF specimens when compared to nonendemic control samples as determined by activation marker and cytokine secretion.

conclusionsThis study identified peptides that, when pooled, had immunogenic properties in humans infected with Coccidioides that can be used to distinguish infected individuals from endemic area healthy controls or nonexposed individuals outside the endemic area. This approach holds relevance for the development of diagnostic assays for VF.

Indexed as

Antigens, FungalCoccidioidesCoccidioidomycosisEpitopes, T-LymphocytePeptidesT-LymphocytesAdultFemaleHistocompatibility Antigens Class IIHumansImmunologic MemoryLeukocytes, MononuclearMaleMiddle AgedAntigens, FungalEpitopes, T-LymphocyteHistocompatibility Antigens Class IIPeptidescoccidioidomycosisdiagnosticepitope predictionMHC bindingvaccine

Identifiers

PMID40094390
PMCPMC12247798

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.