Evidence map›Paper›PMID 40092664›Full record

ReviewComputational and structural biotechnology journal2025

Protein design accelerates the development and application of optogenetic tools.

Lingyun Zhu, Yuxuan Wang, Xiaomin Wu, Guohua Wu, Guohao Zhang, Chuanyang Liu, Shaowei Zhang

Abstract readReview
In one paragraph

Review in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lingyun ZhuDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Yuxuan WangDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Xiaomin WuDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Guohua WuDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Guohao ZhangDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Chuanyang LiuDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.
Shaowei ZhangDepartment of Biology and Chemistry, College of Sciences, National University of Defense Technology, Changsha, Hunan 410073, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optogenetics has substantially enhanced our understanding of biological processes by enabling high-precision tracking and manipulation of individual cells. It relies on photosensitive proteins to monitor and control cellular activities, thereby paving the way for significant advancements in complex system research. Photosensitive proteins play a vital role in the development of optogenetics, facilitating the establishment of cutting-edge methods. Recent breakthroughs in protein design have opened up opportunities to develop protein-based tools that can precisely manipulate and monitor cellular activities. These advancements will significantly accelerate the development and application of optogenetic tools. This article emphasizes the pivotal role of protein design in the development of optogenetic tools, offering insights into potential future directions. We begin by providing an introduction to the historical development and fundamental principles of optogenetics, followed by an exploration of the operational mechanisms of key photosensitive domains, which includes clarifying the conformational changes they undergo in response to light, such as allosteric modulation and dimerization processes. Building on this foundation, we reveal the development of protein design tools that will enable the creation of even more sophisticated optogenetic techniques.

Indexed as

Machine learningOptogeneticsPhotosensitive domainsProtein design

Identifiers

PMID40092664
PMCPMC11908464

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.