Evidence map›Paper›PMID 40091053›Full record

ArticleNature communications2025

Drosophila ovarian stem cell niche ageing involves coordinated changes in transcription and alternative splicing.

Dilamm Even-Ros, Judit Huertas-Romero, Miriam Marín-Menguiano, Gretel Nusspaumer, Miguel Borge, Manuel Irimia, Federico Zurita, Acaimo González-Reyes

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dilamm Even-RosCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Junta de Andalucía-UPO, Carretera de Utrera km 1, 41013, Seville, Spain.ORCID http://orcid.org/0000-0002-5307-034X
Judit Huertas-RomeroCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Junta de Andalucía-UPO, Carretera de Utrera km 1, 41013, Seville, Spain.ORCID http://orcid.org/0000-0003-1053-1916
Miriam Marín-MenguianoCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Junta de Andalucía-UPO, Carretera de Utrera km 1, 41013, Seville, Spain.ORCID http://orcid.org/0000-0002-9793-3944
Gretel NusspaumerCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Junta de Andalucía-UPO, Carretera de Utrera km 1, 41013, Seville, Spain.
Miguel BorgeCentre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.ORCID http://orcid.org/0000-0002-7815-315X
Manuel IrimiaCentre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.ORCID http://orcid.org/0000-0002-2179-2567
Federico ZuritaDepartamento de Genética e Instituto de Biotecnología, Universidad de Granada, Centro de Investigación Biomédica, 18071, Granada, Spain. f.zurita@ugr.es.ORCID http://orcid.org/0000-0001-7580-3543
Acaimo González-ReyesCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Junta de Andalucía-UPO, Carretera de Utrera km 1, 41013, Seville, Spain. agonrey@upo.es.ORCID http://orcid.org/0000-0003-3048-0968

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression (GE) and alternative splicing (AS) contribute to the formation of new interaction networks with potentially significant cellular functions. Here, we investigate ageing in the Drosophila female germline stem cell (GSC) niche and describe functional changes in both GE and AS. The GSC niche comprises three types of support cells, whose ageing transcriptomes reveal differential GE and AS variations related to cell adhesion, cytoskeleton and neural signalling. Because each population show distinctive GE and AS changes, niche cell types possess unique ageing signatures. Depending on the cell population, groups of genes display changes in both GE and AS, revealing a coordinated regulation of transcription and splicing during niche ageing. One such gene is Fasciclin 2, a neural adhesion molecule that we find is essential for niche functioning. Furthermore, genes involved in AS undergo changes in GE and/or AS themselves, providing a mechanistic explanation for the coordination of these two processes during niche ageing. This is the case of the splicing factor Smu1, described here as a key element necessary for ovarian niche homeostasis.

Indexed as

AgingAlternative SplicingDrosophila melanogasterOvaryStem Cell NicheStem CellsTranscription, GeneticAnimalsDrosophila ProteinsFemaleTranscriptomeDrosophila Proteins

Identifiers

PMID40091053
PMCPMC11911433

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.