Evidence map›Paper›PMID 40089503›Full record

ArticleNature communications2025

Phosphate-dependent nuclear export via a non-classical NES class recognized by exportin Msn5.

Ho Yee Joyce Fung, Sanraj R Mittal, Ashley B Niesman, Jenny Jiou, Binita Shakya, Takuya Yoshizawa, Ahmet E Cansizoglu, Michael P Rout, Yuh Min Chook

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Transcriptomic Analysis Reveals HowLife (Basel, Switzerland) · 2026
    Article
  2. International journal of molecular sciences · 2026
    Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Ho Yee Joyce FungDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.ORCID http://orcid.org/0000-0002-0502-1957
Sanraj R MittalLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, 10021, US.ORCID http://orcid.org/0000-0002-2788-5537
Ashley B NiesmanDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.ORCID http://orcid.org/0009-0008-0118-7483
Jenny JiouDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.ORCID http://orcid.org/0000-0002-2124-5272
Binita ShakyaDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.
Takuya YoshizawaDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.
Ahmet E CansizogluDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US.
Michael P RoutLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, 10021, US.ORCID http://orcid.org/0000-0003-2010-706X
Yuh Min ChookDepartment of Pharmacology, UT Southwestern Medical Center, Dallas, TX, 75039, US. yuhmin.chook@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-4974-0726

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
Structure-Function Mapping of the Nuclear Pore Complex-RenewalR01GM112108 · NIGMS · ROCKEFELLER UNIVERSITY · PI JOHN D. AITCHISON, MICHAEL P ROUT · 2015 to 2026
$9.1M
Structures and Mechanisms of Nuclear Import and ExportR01GM069909 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI CHOOK, YUH MIN · 2004 to 2020
$5.8M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Biochemical and cellular functions of Karyopherins - Revision - 2R35GM141461 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Yuh Min Chook · 2021 to 2026
$2.8M
Altered Communication between the nucleus and the mitochondria under oncogenic statesR01CA228351 · NCI · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2019 to 2023
$1.9M
NCI NIH HHS R01 CA228351NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM069909NIGMS NIH HHS R01 GM112108NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R35 GM141461NIGMS NIH HHS U24 GM129547U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) P41GM109824, R01CA228351, R01GM112108U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM141461, R01GM069909Welch Foundation I-1532
6 · The paper itself

Abstract

Gene expression in response to environmental stimuli is dependent on nuclear localization of key signaling components, which can be tightly regulated by phosphorylation. This is exemplified by the phosphate-sensing transcription factor Pho4, which requires phosphorylation for nuclear export by the yeast exportin Msn5. Here, we present a high resolution cryogenic-electron microscopy structure showing the phosphorylated 35-residue nuclear export signal of Pho4, which binds the concave surface of Msn5 through two Pho4 phospho-serines that align with two Msn5 basic patches. These findings characterize a mechanism of phosphate-specific recognition mediated by a non-classical signal distinct from that for Exportin-1. Furthermore, the discovery that unliganded Msn5 is autoinhibited explains the positive cooperativity of Pho4/Ran-binding and proposes a mechanism for Pho4's release in the cytoplasm. These findings advance our understanding of the diversity of signals that drive nuclear export and how cargo phosphorylation is crucial in regulating nuclear transport and controlling cellular signaling pathways.

Indexed as

KaryopherinsNuclear Export SignalsPhosphatesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsActive Transport, Cell NucleusCell NucleusCryoelectron MicroscopyDNA-Binding ProteinsPhosphorylationProtein BindingSignal TransductionDNA-Binding ProteinsKaryopherinsMSN5 protein, S cerevisiaeNuclear Export SignalsPHO4 protein, S cerevisiaePhosphatesSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID40089503
PMCPMC11910620

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.