Evidence map›Paper›PMID 40087373›Full record

ArticleScientific reports2025

Genome-wide association studies of dairy cattle resistance to digital dermatitis recorded at four distinct lactation stages.

Eirini Tarsani, Bingjie Li, Alkiviadis Anagnostopoulos, Matthew Barden, Bethany E Griffiths, Cherry Bedford, Mike Coffey, Androniki Psifidi, Georgios Oikonomou, Georgios Banos

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Eirini TarsaniDepartment of Animal and Veterinary Sciences, Scotland's Rural College (SRUC), Easter Bush, Midlothian, EH25 9RG, UK. Eirini.Tarsani@sruc.ac.uk.
Bingjie LiDepartment of Animal and Veterinary Sciences, Scotland's Rural College (SRUC), Easter Bush, Midlothian, EH25 9RG, UK.
Alkiviadis AnagnostopoulosDepartment of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Neston, CH64 7TE, UK.
Matthew BardenDepartment of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Neston, CH64 7TE, UK.
Bethany E GriffithsDepartment of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Neston, CH64 7TE, UK.
Cherry BedfordDepartment of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Neston, CH64 7TE, UK.
Mike CoffeyDepartment of Animal and Veterinary Sciences, Scotland's Rural College (SRUC), Easter Bush, Midlothian, EH25 9RG, UK.
Androniki PsifidiRoyal Veterinary College, Hawkshead Lane, Hatfield, Hertfordshire, AL9 7TA, UK.
Georgios OikonomouDepartment of Livestock and One Health, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Leahurst Campus, Neston, CH64 7TE, UK.
Georgios BanosDepartment of Animal and Veterinary Sciences, Scotland's Rural College (SRUC), Easter Bush, Midlothian, EH25 9RG, UK. georgios.banos@sruc.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/X008762/1UK Research and Innovation (UKRI) Biotechnology and Biological Sciences Research Council BBSRC Reference: BB/X008754/1 and BB /X017338/1
6 · The paper itself

Abstract

Digital dermatitis (DD) is an endemic infectious hoof disease causing lameness in dairy cattle. The aim of the present study was to investigate the genetic profile of DD development using phenotypic and genotypic data on 2192 Holstein cows. The feet of each cow were clinically examined four times: pre-calving, shortly after calving, near peak of milk production, and in late lactation. Presence or absence of disease and proportion of healthy feet per cow constituted two DD phenotypes of study. For each phenotype and timepoint of clinical examination, we conducted single-step genome-wide association analyses to identify individual markers and genomic regions linked to DD. We focused on the ten 1-Mb windows that explained the largest proportion of the total genetic variance as well as windows that enclosed significant markers. Functional enrichment analysis was also applied to determine functional candidate genes for DD. Significant (P < 0.05) genomic heritability estimates were derived ranging from 0.21 to 0.25. Results revealed two markers on chromosomes 7 and 15 that were related to both disease phenotypes. Furthermore, we identified three genomic windows on chromosome 14 and one window on chromosome 7 each explaining more than 1% of the trait additive genetic variance. Functional enrichment analysis revealed multiple promising candidate genes implicated in hoof health, wound healing, and inflammatory skin diseases. Collectively, our results provide novel insights into the biological mechanism of host resistance to DD development in dairy cattle and support genomic selection towards improving foot health.

Indexed as

Cattle DiseasesDigital DermatitisDisease ResistanceGenome-Wide Association StudyLactationAnimalsCattleFemaleGenetic Predisposition to DiseaseGenotypePhenotypePolymorphism, Single NucleotideDairy cattleDigital dermatitisGenome-wide association study

Identifiers

PMID40087373
PMCPMC11909109

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.