Evidence map›Paper›PMID 40085657›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Vortex reversal is a precursor of confined bacterial turbulence.

Daiki Nishiguchi, Sora Shiratani, Kazumasa A Takeuchi, Igor S Aranson

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Collective bacterial condensation is fundamentally constrained by the emergence of active turbulence.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Vortex reversal is a precursor of confined bacterial turbulence.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Daiki NishiguchiDepartment of Physics, School of Science, Institute of Science Tokyo, Meguro-ku, Tokyo 152-8551, Japan.ORCID 0000-0002-6390-5072
Sora ShirataniDepartment of Physics, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
Kazumasa A TakeuchiDepartment of Physics, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.ORCID 0000-0002-7217-6860
Igor S AransonDepartment of Physics, School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.ORCID 0000-0002-4062-5393

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) JP19H05800MEXT | Japan Society for the Promotion of Science (JSPS) JP20K14426MEXT | Japan Society for the Promotion of Science (JSPS) JP23K25838MEXT | Japan Society for the Promotion of Science (JSPS) JP24K00593MEXT | Japan Society for the Promotion of Science (JSPS) JP24KJ0890MEXT | Japan Society for the Promotion of Science (JSPS) JPJSCCA20230002National Science Foundation (NSF) PHY-2140010
6 · The paper itself

Abstract

Active turbulence, or chaotic self-organized collective motion, is often observed in concentrated suspensions of motile bacteria and other systems of self-propelled interacting agents. To date, there is no fundamental understanding of how geometrical confinement orchestrates active turbulence and alters its physical properties. Here, by combining large-scale experiments, computer modeling, and analytical theory, we have identified a generic sequence of transitions occurring in bacterial suspensions confined in cylindrical wells of varying radii. With increasing the well's radius, we observed that persistent vortex motion gives way to periodic vortex reversals, four-vortex pulsations, and then well-developed active turbulence. Using computational modeling and analytical theory, we have shown that vortex reversal results from the nonlinear interaction of the first three azimuthal modes that become unstable with the radius increase. The analytical results account for our key experimental findings. To further validate our approach, we reconstructed equations of motion from experimental data. Our findings shed light on the universal properties of confined bacterial active matter and can be applied to various biological and synthetic active systems.

Indexed as

BacteriaBacterial Physiological PhenomenaEscherichia coliModels, BiologicalComputer Simulationactive matteractive turbulencebacteriavortexweakly nonlinear analysis

Identifiers

PMID40085657
PMCPMC11929451

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.