Evidence map›Paper›PMID 40084960›Full record

ArticleMicrobiology spectrum2025

GenomicGapID: leveraging spatial distribution of conserved genomic sites for broad-spectrum microbial identification.

Vishwaratn Asthana, Pallavi Bugga, Clara Elaine Smith, Catherine Wellman, Zachary Dwight, Piyush Ranjan, Erika Martínez Nieves, Robert P Dickson, J Scott VanEpps

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology spectrum, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vishwaratn AsthanaDepartment of Internal Medicine, Division of Hospital Medicine, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-2421-2820
Pallavi BuggaDepartment of Emergency Medicine-Adult, University of Michigan, Ann Arbor, Michigan, USA.
Clara Elaine SmithDepartment of Emergency Medicine-Adult, University of Michigan, Ann Arbor, Michigan, USA.
Catherine WellmanDepartment of Emergency Medicine-Adult, University of Michigan, Ann Arbor, Michigan, USA.
Zachary DwightPrecision Biomarker Laboratories, Cedars-Sinai Medical Center, Beverly Hills, California, USA.
Piyush RanjanDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Erika Martínez NievesDepartment of Emergency Medicine-Adult, University of Michigan, Ann Arbor, Michigan, USA.
Robert P DicksonDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan, USA.
J Scott VanEppsDepartment of Emergency Medicine-Adult, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-0805-0913

Funding

PULMONARY CELLULAR AND MOLECULAR BIOLOGY TRAININGT32HL007749 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 1993 to 2026
$19.9M
Midcareer Investigator Award in Patient-Oriented Research in the Microbiome and Lung DiseaseK24HL159247 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 2022 to 2026
$625k
NHLBI NIH HHS K24 HL159247NHLBI NIH HHS T32 HL007749
6 · The paper itself

Abstract

Bacterial detection and identification methods can be broadly classified as either untargeted with expansive taxonomic coverage or targeted with narrow taxonomic focus. Untargeted approaches, such as culture and sequencing, are often time-consuming and/or costly, whereas targeted methods, such as PCR, can offer faster and more cost-effective results but require

Indexed as

BacteriaGenome, BacterialDNA PrimersGenomicsHumansDNA Primersgenomicsmicrobial identificationPCR

Identifiers

PMID40084960
PMCPMC12054053

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.