Evidence map›Paper›PMID 40083414›Full record

ArticleMycology2025

An alignment- and reference-free strategy using

Guohui Shi, Yi Dai, Da Zhou, Mengmeng Chen, Jiaqi Zhang, Yilong Bi, Shuai Liu, Qi Wu

Abstract read
In one paragraph

Article in Mycology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Genomic and phenotypic comparison ofbioRxiv : the preprint server for biology · 2025
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guohui ShiState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Yi DaiState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Da ZhouSchool of Mathematical Sciences, Xiamen University, Xiamen, China.
Mengmeng ChenState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Jiaqi ZhangState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Yilong BiSchool of Mathematical Sciences, Xiamen University, Xiamen, China.
Shuai LiuCollege of Life Science, University of the Chinese Academy of Sciences, Beijing, China.
Qi WuState Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.ORCID https://orcid.org/0000-0001-7710-4156

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pangenomes are replacing single reference genomes to capture all variants within a species or clade, but their analysis predominantly leverages graph-based methods that require multiple high-quality genomes and computationally intensive multiple-genome alignments.

Indexed as

alignment-freegenetic diversityK-merspopulation genomicsreference-free

Identifiers

PMID40083414
PMCPMC11899203

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.