Evidence map›Paper›PMID 40082723›Full record

ArticleThe EMBO journal2025

An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins.

Alireza Ghanbarpour, Bertina Telusma, Barrett M Powell, Jia Jia Zhang, Isabella Bolstad, Carolyn Vargas, Sandro Keller, Tania A Baker, Robert T Sauer, Joseph H Davis

Abstract read
In one paragraph

Article in The EMBO journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
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  11. In situ cryo-ET visualization of mitochondrial depolarization and mitophagic engulfment.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. The versatile role of YidC in membrane protein biosynthesis and quality control.Biochimica et biophysica acta. Molecular cell research · 2025
    Review
  15. Article
  16. bioRxiv : the preprint server for biology · 2025
    Article
  17. Automated model-free analysis of cryo-EM volume ensembles with SIREn.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Alireza GhanbarpourDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA. alirezag@wustl.edu.ORCID http://orcid.org/0000-0002-7485-029X
Bertina TelusmaDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA.ORCID http://orcid.org/0000-0002-6804-9527
Barrett M PowellDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA.
Jia Jia ZhangDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA.ORCID http://orcid.org/0000-0002-3003-4485
Isabella BolstadDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA.
Carolyn VargasBiophysics, Institute of Molecular Biosciences (IMB), NAWI Graz, University of Graz, Humboldtstr. 50/III, Graz, 8010, Austria.
Sandro KellerBiophysics, Institute of Molecular Biosciences (IMB), NAWI Graz, University of Graz, Humboldtstr. 50/III, Graz, 8010, Austria.ORCID http://orcid.org/0000-0001-5469-8772
Tania A BakerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA.
Robert T SauerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA. bobsauer@mit.edu.ORCID http://orcid.org/0000-0002-1719-5399
Joseph H DavisDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02129, USA. jhdavis@mit.edu.ORCID http://orcid.org/0000-0002-8858-8907

Funding

Tools to determine and analyze the structures of molecular machines in motionR01GM144542 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Joseph Davis · 2022 to 2026
$1.6M
Structure and function of ClpXPR35GM141517 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAUER, ROBERT T · 2021 to 2024
$1.5M
HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01-GM144542HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35-GM141517National Science Foundation (NSF) CAREER-2046778NIGMS NIH HHS R01 GM144542NIGMS NIH HHS R35 GM141517Richard and Susan Smith Family Foundation (RSSFF) Odyssey Award
6 · The paper itself

Abstract

The AAA protease FtsH associates with HflK/C subunits to form a megadalton-size complex that spans the inner membrane and extends into the periplasm of E. coli. How this bacterial complex and homologous assemblies in eukaryotic organelles recruit, extract, and degrade membrane-embedded substrates is unclear. Following the overproduction of protein components, recent cryo-EM structures showed symmetric HflK/C cages surrounding FtsH in a manner proposed to inhibit the degradation of membrane-embedded substrates. Here, we present structures of native protein complexes, in which HflK/C instead forms an asymmetric nautilus-shaped assembly with an entryway for membrane-embedded substrates to reach and be engaged by FtsH. Consistent with this nautilus-like structure, proteomic assays suggest that HflK/C enhances FtsH degradation of certain membrane-embedded substrates. Membrane curvature in our FtsH•HflK/C complexes is opposite that of surrounding membrane regions, a property that correlates with lipid scramblase activity and possibly with FtsH's function in the degradation of membrane-embedded proteins.

Indexed as

ATP-Dependent ProteasesEscherichia coliEscherichia coli ProteinsMembrane ProteinsCell MembraneCryoelectron MicroscopyProteolysisATP-Dependent ProteasesEscherichia coli ProteinsFtsH protein, E coliMembrane ProteinsAAA ProteaseCryo-EMMacromolecular ComplexesProteostasis

Identifiers

PMID40082723
PMCPMC12048511

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.