Evidence map›Paper›PMID 40082478›Full record

ArticleScientific data2025

Chromosome-level genome assembly of the spangled emperor, Lethrinus nebulosus (Forsskål 1775).

Lara Parata, Liam Anstiss, Emma de Jong, Adrianne Doran, Richard J Edwards, Stephen J Newman, Samuel D Payet, Craig L Skepper, Corey B Wakefield, OceanOmics Centre and 2 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lara ParataMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia. lara.parata@uwa.edu.au.ORCID http://orcid.org/0000-0003-2408-6788
Liam AnstissMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0009-0009-2876-3820
Emma de JongMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0002-2501-6119
Adrianne DoranMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0009-0006-0440-9227
Richard J EdwardsMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0002-3645-5539
Stephen J NewmanWestern Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, 39 Northside Drive, Hillarys, 6025, WA, Australia.ORCID http://orcid.org/0000-0002-5324-5568
Samuel D PayetWestern Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, 39 Northside Drive, Hillarys, 6025, WA, Australia.ORCID http://orcid.org/0000-0002-2466-4237
Craig L SkepperWestern Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, 39 Northside Drive, Hillarys, 6025, WA, Australia.
Corey B WakefieldWestern Australian Fisheries and Marine Research Laboratories, Department of Primary Industries and Regional Development, Government of Western Australia, 39 Northside Drive, Hillarys, 6025, WA, Australia.ORCID http://orcid.org/0000-0001-5435-6473
OceanOmics Centre
OceanOmics Division
Shannon CorriganMinderoo OceanOmics Centre at UWA, Oceans Institute, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0003-0093-5028

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spangled emperor, Lethrinus nebulosus (Forsskål 1775), is a tropical marine fish of economic and cultural importance throughout the Indo-West Pacific. It is one of the most targeted recreational fishes in the Gascoyne Coast Bioregion of Western Australia where it serves as an indicator species for recreational fishing. Here, we present a highly accurate, near-gapless, chromosome-level, haplotype-phased reference genome assembly of L. nebulosus (Lethrinus nebulosus (Spangled Emperor) genome, fLetNeb1.1; PRJNA1074345), the first for the species and the first high-quality genome representative of the family Lethrinidae. The 1.09 Gb genome was assembled from PacBio HiFi and Dovetail Omni-C proximity ligation sequencing data. The contig N50 is 21-24 Mbp and BUSCO completeness greater than 99%. A preliminary gene annotation identified 24,583 genes with the predicted transcriptome achieving a BUSCO completeness score of 99.1% This resource will facilitate genomic studies to inform the sustainable management of L. nebulosus and other Lethrinids.

Indexed as

ChromosomesFishesGenomeAnimalsMolecular Sequence AnnotationWestern Australia

Identifiers

PMID40082478
PMCPMC11906739

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.