Evidence map›Paper›PMID 40079079›Full record

ArticleJMIR medical informatics2025

Large Language Model-Based Critical Care Big Data Deployment and Extraction: Descriptive Analysis.

Zhongbao Yang, Shan-Shan Xu, Xiaozhu Liu, Ningyuan Xu, Yuqing Chen, Shuya Wang, Ming-Yue Miao, Mengxue Hou, Shuai Liu, Yi-Min Zhou and 2 more

Abstract read
In one paragraph

Article in JMIR medical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Zhongbao Yang *Department of Critical Care Medicine, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.ORCID 0009-0007-9453-233X
Shan-Shan Xu *Department of Critical Care Medicine, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.ORCID 0009-0007-7509-1196
Xiaozhu Liu *Department of Critical Care Medicine, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.ORCID 0000-0002-7800-3100
Ningyuan XuSchool of Information Science and Technology, Beijing University of Technology, Beijing, China.ORCID 0009-0002-7816-9220
Yuqing ChenDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0009-0009-9768-4245
Shuya WangDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0009-0000-1656-3682
Ming-Yue MiaoDepartment of Critical Care Medicine, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.ORCID 0009-0006-3454-7794
Mengxue HouDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0009-0005-9633-8608
Shuai LiuDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0009-0001-9733-1441
Yi-Min ZhouDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0000-0003-3064-4213
Jian-Xin ZhouDepartment of Critical Care Medicine, Beijing Shijitan Hospital, Capital Medical University, Beijing, China.ORCID 0000-0002-1559-7554
Linlin ZhangDepartment of Critical Care Medicine, Beijing Tiantan Hospital, Capital Medical University, No.119 Nansihuanxi Road, Fengtai District, Beijing, 100070, China, 86 17611757717.ORCID 0000-0002-5960-4605

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Publicly accessible critical care-related databases contain enormous clinical data, but their utilization often requires advanced programming skills. The growing complexity of large databases and unstructured data presents challenges for clinicians who need programming or data analysis expertise to utilize these systems directly. Objective: This study aims to simplify critical care-related database deployment and extraction via large language models. Methods: The development of this platform was a 2-step process. First, we enabled automated database deployment using Docker container technology, with incorporated web-based analytics interfaces Metabase and Superset. Second, we developed the intensive care unit-generative pretrained transformer (ICU-GPT), a large language model fine-tuned on intensive care unit (ICU) data that integrated LangChain and Microsoft AutoGen. Results: The automated deployment platform was designed with user-friendliness in mind, enabling clinicians to deploy 1 or multiple databases in local, cloud, or remote environments without the need for manual setup. After successfully overcoming GPT's token limit and supporting multischema data, ICU-GPT could generate Structured Query Language (SQL) queries and extract insights from ICU datasets based on request input. A front-end user interface was developed for clinicians to achieve code-free SQL generation on the web-based client. Conclusions: By harnessing the power of our automated deployment platform and ICU-GPT model, clinicians are empowered to easily visualize, extract, and arrange critical care-related databases more efficiently and flexibly than manual methods. Our research could decrease the time and effort spent on complex bioinformatics methods and advance clinical research.

Indexed as

Big DataCritical CareProgramming LanguagesDatabases, FactualHumansIntensive Care UnitsLarge Language ModelsAIartificial intelligencebig datacritical care–related databasesdatabase deploymentdatabase extractionGPTICUintensive care unitlarge language modelLLM

Identifiers

PMID40079079
PMCPMC11922493

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.