Evidence map›Paper›PMID 40078964›Full record

ArticleFrontiers in molecular neuroscience2025

Profiling hippocampal neuronal populations reveals unique gene expression mosaics reflective of connectivity-based degeneration in the Ts65Dn mouse model of Down syndrome and Alzheimer's disease.

Melissa J Alldred, Kyrillos W Ibrahim, Harshitha Pidikiti, Sang Han Lee, Adriana Heguy, Gabriela Chiosis, Elliott J Mufson, Grace E Stutzmann, Stephen D Ginsberg

Abstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Melissa J AlldredCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY, United States.
Kyrillos W IbrahimCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY, United States.
Harshitha PidikitiCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY, United States.
Sang Han LeeCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY, United States.
Adriana HeguyGenome Technology Center, New York University Grossman School of Medicine, New York, NY, United States.
Gabriela ChiosisProgram in Chemical Biology, Sloan Kettering Institute, New York, NY, United States.
Elliott J MufsonDepartment of Translational Neuroscience and Neurology, Barrow Neurological Institute, Phoenix, AZ, United States.
Grace E StutzmannCenter for Neurodegenerative Disease and Therapeutics, Rosalind Franklin University, The Chicago Medical School, North Chicago, IL, United States.
Stephen D GinsbergCenter for Dementia Research, Nathan Kline Institute, Orangeburg, NY, United States.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
TAU, AB, SYNUCLEIN AND NITRATIVE/OXIDATIVE DAMAGE IN MCIP01AG014449 · NIA · UNIVERSITY OF PITTSBURGH · PI MUFSON, ELLIOTT JAY · 1997 to 2024
$39.7M
Impact of sex differences on the trajectory of interactome dysfunctions across the AD spectrumR01AG074004 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI CHIOSIS, GABRIELA, GINSBERG, STEPHEN D · 2021 to 2025
$6.0M
Selective interactome vulnerability across the Alzheimer’s disease spectrumR01AG072599 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI GABRIELA CHIOSIS, STEPHEN D GINSBERG · 2023 to 2026
$5.4M
Neuropathology and inflammation in a nonhuman primate model of insulin resistance/metabolic syndromeR01AG085572 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI STEPHEN D GINSBERG, PETER J HAVEL · 2024 to 2026
$3.8M
Septhohippocamal connectome dysfunction in Down syndrome associated with Alzheimer’s disease pathophysiologyRF1AG077103 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GINSBERG, STEPHEN D, STUTZMANN, GRACE E. · 2023 to 2023
$2.5M
Default mode network dysfunction in Down SyndromeRF1AG081286 · NIA · ST. JOSEPH'S HOSPITAL AND MEDICAL CENTER · PI MUFSON, ELLIOTT JAY, PEREZ, SYLVIA EVA · 2023 to 2023
$1.8M
Selective interactome vulnerability across the Alzheimer’s disease spectrumR56AG072599 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI CHIOSIS, GABRIELA, GINSBERG, STEPHEN D · 2021 to 2021
$1.2M
Septhohippocamal connectome dysfunction in Down syndrome associated with Alzheimer’s disease pathophysiologyR01AG077103 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STEPHEN D GINSBERG, Grace E. Stutzmann · 2026 to 2026
$805k
Default mode network dysfunction in Down SyndromeR01AG081286 · NIA · ST. JOSEPH'S HOSPITAL AND MEDICAL CENTER · PI ELLIOTT Jay MUFSON, SYLVIA EVA PEREZ · 2026 to 2026
$736k
NCI NIH HHS P30 CA008748NIA NIH HHS P01 AG014449NIA NIH HHS R01 AG072599NIA NIH HHS R01 AG074004NIA NIH HHS R01 AG077103NIA NIH HHS R01 AG081286NIA NIH HHS R01 AG085572NIA NIH HHS R56 AG072599NIA NIH HHS RF1 AG077103NIA NIH HHS RF1 AG081286
6 · The paper itself

Abstract

Introduction: Individuals with Down syndrome (DS) exhibit neurological deficits throughout life including the development of in Alzheimer's disease (AD) pathology and cognitive impairment. At the cellular level, dysregulation in neuronal gene expression is observed in postmortem human brain and mouse models of DS/AD. To date, RNA-sequencing (RNA-seq) analysis of hippocampal neuronal gene expression including the characterization of discrete circuit-based connectivity in DS remains a major knowledge gap. We postulate that spatially characterized hippocampal neurons display unique gene expression patterns due, in part, to dysfunction of the integrity of intrinsic circuitry. Methods: We combined laser capture microdissection to microisolate individual neuron populations with single population RNA-seq analysis to determine gene expression analysis of CA1 and CA3 pyramidal neurons and dentate gyrus granule cells located in the hippocampus, a region critical for learning, memory, and synaptic activity. Results: The hippocampus exhibits age-dependent neurodegeneration beginning at ~6 months of age in the Ts65Dn mouse model of DS/AD. Each population of excitatory hippocampal neurons exhibited unique gene expression alterations in Ts65Dn mice. Bioinformatic inquiry revealed unique vulnerabilities and differences with mechanistic implications coinciding with onset of degeneration in this model of DS/AD. Conclusions: These cell-type specific vulnerabilities may underlie degenerative endophenotypes suggesting precision medicine targeting of individual populations of neurons for rational therapeutic development.

Indexed as

Alzheimer’s diseasebioinformaticsDown syndromehippocampuslaser capture microdissectionRNA sequencingselective vulnerabilitytrisomy

Identifiers

PMID40078964
PMCPMC11897496

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.