Evidence map›Paper›PMID 40075065›Full record

ArticleNature communications2025

The translation inhibitors kasugamycin, edeine and GE81112 target distinct steps during 30S initiation complex formation.

Haaris A Safdari, Martino Morici, Ana Sanchez-Castro, Andrea Dallapè, Helge Paternoga, Anna Maria Giuliodori, Attilio Fabbretti, Pohl Milón, Daniel N Wilson

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haaris A Safdari *Institute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany.ORCID http://orcid.org/0000-0003-3533-090X
Martino Morici *Institute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany.
Ana Sanchez-Castro *Laboratory of Biomolecules, Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas (UPC), 15023, Lima, Peru.ORCID http://orcid.org/0000-0003-3861-3083
Andrea DallapèInstitute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany.
Helge PaternogaInstitute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany.ORCID http://orcid.org/0000-0001-8335-3239
Anna Maria GiuliodoriLaboratory of Genetics of Microorganisms and Microbial Biotechnology, School of Biosciences and Veterinary Medicine, University of Camerino, 62032, Camerino, MC, Italy.
Attilio FabbrettiLaboratory of Genetics of Microorganisms and Microbial Biotechnology, School of Biosciences and Veterinary Medicine, University of Camerino, 62032, Camerino, MC, Italy.ORCID http://orcid.org/0000-0003-3928-2781
Pohl MilónLaboratory of Biomolecules, Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas (UPC), 15023, Lima, Peru. pmilon@upc.pe.ORCID http://orcid.org/0000-0001-6679-5473
Daniel N WilsonInstitute for Biochemistry and Molecular Biology, University of Hamburg, 20146, Hamburg, Germany. Daniel.Wilson@chemie.uni-hamburg.de.ORCID http://orcid.org/0000-0003-3816-3828

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) WI3285/12-1
6 · The paper itself

Abstract

During bacterial translation initiation, the 30S ribosomal subunit, initiation factors, and initiator tRNA define the reading frame of the mRNA. This process is inhibited by kasugamycin, edeine and GE81112, however, their mechanisms of action have not been fully elucidated. Here we present cryo-electron microscopy structures of 30S initiation intermediate complexes formed in the presence of kasugamycin, edeine and GE81112 at resolutions of 2.0-2.9 Å. The structures reveal that all three antibiotics bind within the E-site of the 30S and preclude 30S initiation complex formation. While kasugamycin and edeine affect early steps of 30S pre-initiation complex formation, GE81112 stalls pre-initiation complex formation at a further step by allowing start codon recognition, but impeding IF3 departure. Collectively, our work highlights how chemically distinct compounds binding at a conserved site on the 30S can interfere with translation initiation in a unique manner.

Indexed as

AminoglycosidesAnti-Bacterial AgentsPeptide Chain Initiation, TranslationalProtein Synthesis InhibitorsRibosome Subunits, Small, BacterialCodon, InitiatorCryoelectron MicroscopyEscherichia coliProtein BiosynthesisAminoglycosidesAnti-Bacterial AgentsCodon, InitiatorkasugamycinProtein Synthesis Inhibitors

Identifiers

PMID40075065
PMCPMC11903750

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.