Evidence map›Paper›PMID 40073054›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Characterization of diverse Cas9 orthologs for genome and epigenome editing.

Gabriel L Butterfield, Dahlia Rohm, Avery Roberts, Matthew A Nethery, Anthony J Rizzo, Daniel J Morone, Lisa Garnier, Nahid Iglesias, Rodolphe Barrangou, Charles A Gersbach

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gabriel L Butterfield *Department of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.ORCID 0000-0002-6825-6286
Dahlia Rohm *Department of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.
Avery RobertsDepartment of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC 27606.
Matthew A NetheryDepartment of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC 27606.
Anthony J RizzoDepartment of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.
Daniel J MoroneDepartment of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.
Lisa GarnierDepartment of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.
Nahid IglesiasDepartment of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.
Rodolphe BarrangouDepartment of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC 27606.ORCID 0000-0002-0648-3504
Charles A GersbachDepartment of Biomedical Engineering, and Center for Advanced Genomic Technologies, Duke University, Durham, NC 27708.

Funding

The Duke FUNCTION Center: Pioneering the comprehensive identification of combinatorial noncoding causes of diseaseRM1HG011123 · NHGRI · DUKE UNIVERSITY · PI GREGORY E CRAWFORD, Raluca Gordan · 2020 to 2026
$21.9M
High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular PhenotypesUM1HG012053 · NHGRI · DUKE UNIVERSITY · PI GREGORY E CRAWFORD, Charles A. Gersbach · 2021 to 2026
$10.7M
Beyond GWAS: High Throughput Functional Genomics & Epigenome Editing to Elucidate the Effects of Genetic Associations for SchizophreniaR01MH125236 · NIMH · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E, GERSBACH, CHARLES A. · 2021 to 2025
$8.1M
Epigenetic Programming of T Cells for Enhanced Cellular ImmunotherapyR01CA289574 · NCI · DUKE UNIVERSITY · PI Charles A. Gersbach · 2024 to 2026
$1.7M
Epigenome Editing Technologies for Treating Diverse DiseaseU01AI146356 · NIAID · DUKE UNIVERSITY · PI GERSBACH, CHARLES A. · 2019 to 2022
$1.6M
DOD | ARPA | Defense Sciences Office, DARPA (DSO) HR0011-19-2-0008HHS | NIH (NIH) R01MH125236HHS | NIH (NIH) RM1HG011123HHS | NIH (NIH) U01AI146356HHS | NIH (NIH) UM1HG012053NCI NIH HHS R01 CA289574NHGRI NIH HHS RM1 HG011123NHGRI NIH HHS UM1 HG012053NIAID NIH HHS U01 AI146356NIMH NIH HHS R01 MH125236NSF (NSF) EFMA-1830957
6 · The paper itself

Abstract

CRISPR-Cas9 systems have revolutionized biotechnology, creating diverse new opportunities for biomedical research and therapeutic genome and epigenome editing. Despite the abundance of bacterial CRISPR-Cas9 systems, relatively few are effective in human cells, limiting the overall potential of CRISPR technology. To expand the CRISPR-Cas toolbox, we characterized a set of type II CRISPR-Cas9 systems from select bacterial genera and species encoding diverse Cas9s. Four systems demonstrated robust and specific gene repression in human cells when used as nuclease-null dCas9s fused with a KRAB domain and were also highly active nucleases in human cells. These systems have distinct protospacer adjacent motifs (PAMs), including AT-rich motifs and sgRNA features orthogonal to the commonly used

Indexed as

CRISPR-Associated Protein 9CRISPR-Cas SystemsEpigenomeGene EditingEpigenome EditingHEK293 CellsHumansRNA, Guide, CRISPR-Cas SystemsStaphylococcus aureusStreptococcus pyogenesCRISPR-Associated Protein 9RNA, Guide, CRISPR-Cas SystemsCas9CRISPRgenome editing

Identifiers

PMID40073054
PMCPMC11929499

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.