Evidence map›Paper›PMID 40070330›Full record

ArticleCurrent pharmaceutical design2025

Targeting Anaplastic Lymphoma Kinase in Oncology: Identification and Computational Validation of Novel Inhibitors for Anaplastic Large Cell Lymphoma, Non-small Cell Lung Cancer, and Neuroblastoma.

Aftab Alam, Mohammed Hamed Saeed Alqarni, Indrakant Kumar Singh, Ahmed Ibrahim Ibrahim Foudah, Neeraj Upmanyu, Mohamed Fatehy Hassan Balaha

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Article in Current pharmaceutical design, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Aftab AlamDepartment of Pharmacognosy, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia.
Mohammed Hamed Saeed AlqarniDepartment of Pharmacognosy, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia.
Indrakant Kumar SinghMolecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Delhi, India.
Ahmed Ibrahim Ibrahim FoudahDepartment of Pharmacognosy, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia.
Neeraj UpmanyuDepartment of Pharmaceutical Chemistry, Sagar Institute of Research and Technology-Pharmacy, Sanjeev Agrawal Global Educational University, Sahara Bypass Road, Katara Hills Extension, Bhopal (M.P.) 462022, India.
Mohamed Fatehy Hassan BalahaDepartment of Clinical Pharmacy, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia.

Funding

Prince Sattam bin Abdulaziz University PSAU/2024/03/29620
6 · The paper itself

Abstract

backgroundAnaplastic Lymphoma Kinase (ALK) is implicated in several cancers, including anaplastic large cell lymphoma, non-small cell lung cancer, and neuroblastoma. Targeted inhibition of ALK represents a promising therapeutic strategy.

aimsThis study aimed to identify and evaluate potential ALK inhibitors using virtual screening and computational analyses to determine their binding stability, affinity, and dynamic behavior, ultimately assessing their potential as therapeutic agents for ALK-driven cancers.

objectiveThe objective of this study was to identify potential ALK inhibitors using virtual screening techniques and to evaluate their binding affinities and stability through computational analyses.

methodsThis study utilized virtual screening to identify potential ALK inhibitors from the MTiOpen Screen Diverse library and selected three compounds (24331480, 26536128, and 24353407) based on their binding affinities. These compounds underwent optimization using Density Functional Theory (DFT) and were redocked to confirm binding stability. Molecular dynamics simulations, hydrogen bond analysis, MM/PBSA calculations, and PCA-based free energy landscape analysis were also carried out.

resultsThe re-docking experiments confirmed the stable and strong binding affinities of the selected compounds to the ALK active site. Molecular dynamics simulations revealed stable interactions throughout the 200 ns simulation period. Hydrogen bond analysis demonstrated consistent hydrogen bonds between key residues and the inhibitors. MM/PBSA calculations indicated favorable binding free energies, suggesting strong binding affinities. Finally, PCA-based free energy landscape analysis highlighted energetically favorable binding modes.

conclusionThe identified compounds (24331480, 26536128, and 24353407) exhibited promising inhibitory potential against ALK. These findings warrant further experimental validation to confirm their potential as therapeutic agents for ALK-driven cancers.

Indexed as

Anaplastic Lymphoma KinaseAntineoplastic AgentsCarcinoma, Non-Small-Cell LungLung NeoplasmsLymphoma, Large-Cell, AnaplasticNeuroblastomaProtein Kinase InhibitorsHumansMolecular Docking SimulationMolecular Dynamics SimulationALK protein, humanAnaplastic Lymphoma KinaseAntineoplastic AgentsProtein Kinase InhibitorsAnaplastic lymphoma kinasediverse libfree energy landscapehydrogen bond analysis.molecular dynamic simulationvirtual screening

Identifiers

PMID40070330

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